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Math Science

Information Theory Places New Limits On Origin of Life 211

KentuckyFC writes: Most research into the origin of life focuses on the messy business of chemistry, on the nature of self-replicating molecules and on the behavior of autocatalytic reactions. Now one theorist says the properties of information also place important limits on how life must have evolved, without getting bogged down in the biochemical details. The new approach uses information theory to highlight a key property that distinguishes living from non-living systems: their ability to store information and replicate it almost indefinitely. A measure of this how much these systems differ from a state of maximum entropy or thermodynamic equilibrium. The new approach is to create a mathematical model of these informational differences and use it to make predictions about how likely it is to find self-replicating molecules in an artificial life system called Avida. And interestingly, the predictions closely match what researchers have found in practice. The bottom line is that according to information theory, environments favorable to life are unlikely to be unusual.
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Information Theory Places New Limits On Origin of Life

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  • by Anonymous Coward

    It's a fallacy that entropy always increases ON EARTH, and therefore life is impossible to have evolved naturally, because it violates the 2nd law of thermodynamics. That's only true in a closed system, which most definitely the Earth is not. There's this "Sun" bombarding the planet with energy, constantly.

    Stop bringing thermodynamics into biochemical or origin of life questions. It's irrelevant.

    • by K. S. Kyosuke ( 729550 ) on Wednesday September 10, 2014 @09:49AM (#47871443)
      Quoting:

      The key idea in Adami’s formulation is that living systems do not exist in a state of thermodynamic equilibrium

      Not only is it not required, they're looking for exactly the thing you're mentioning, so I don't see any point in your comment. Also, they're not saying anything about Earth with increasing entropy. Where did you get that? Are we reading the same things in the first place?

    • Pumping energy into a system does not necessarily the order of things.

      Also even though the article also mentions therodynamics, shouldn't it be the information theory entropy that is used here?

      • The thermodynamic and information theory definition of entropy are the same, which is why "bringing thermodynamics into biochemical or origin of life questions" is entirely relevant.

        • The definition is the same, but not the application.

          Instead of looking at the state of order in the system, the article seems to be more interested in the transfer of information. That's what I read from their definition of what life is.

    • by goombah99 ( 560566 ) on Wednesday September 10, 2014 @09:59AM (#47871517)

      If we define life as the ability to organize and propopagate information then the highest form of life is a salt crystal or any self propagating organization of atoms with long range order. A diamond has far lower entropy than any living system. Like wise if we define it as system that processes energy to propogate itself then we have Fire as the ultimate for of life.

      clearly gasses (disorded are dead) and crystals are dead. SO is life a liquid (in the middle of the two)? Again obviously not.

      The best definition of a living system in terms of information tehory concepts I have come across is the one by David Wolpert who coined in the term self-dissimilarity in reaction to the vogue study of self-similarity in self-organizing systems. For example, a pile of sand is self-organizing system that is ever changing but also ever-self simmilar. it's not alive either

      so solids, liquids, gasses and self-simmilar self organizing systems are all bankrupt as a informational definition of life. What's self-dissimilarity then?

      It's the concept that the organizational principles of a system can suddenly change as one crosses scales.

      imagine one zooms out from a microsope from the atomic scale. at first you see the atom and it has some interesting symmetires in the way the electron oribits have some simmilarities. at a higher scale we see the molecule. then the collection of molecules. soon we see the patterning of molecules.
      we observe that this is infact cell. then many cells. then it's an organ. then its many organs. then an animal. then a school of fish. then zooming our we see schools of fish separated across the ocean.

      the key insight is this. at each scale everything you infer about the information content and predictibitly of adjaceny in the pattern works to predict the patterns propoagation at a slightly larger zoom. Up until it suddenly fails. you reach the edge of the liver or the edge of the cell or the edge of the animal. then the lower scale is useless in predicting how the next scale up is organized.

      these abrupt steps in dissimilarity is a halmark of living systems. the degree of information gain at the step is phenomenal. this is different than saying for example that a composite rock is alive. the difference is that the system is processing information and energy across these organizational boundaries. that's pretty much the best definition of life interms of a single defintion that can be plotted on a graph. the x-axis is the zoom, and the y-axis is the predictability of the next larger scale from the lower one. you see steps. that plus the processing of information across steps is a living system. If you accept this you might feel like their are non-traditional defintiions of life as well. for example, if a bacteria is living thing, is it possible that a community of bacteria is also a lvifing thing. Perhaps the earth is too.

      What's intriguing here is that systems with this property may imprint themselves on other systems. you might for example be able to spot radio emissions or atmospheric molecular composition that displays the imprint of dissimilar steps in it's self organization.

      SO unless this theory considers this, I'm skeptical about it. Salt is self organizing but it's not alive. It is however highly probable. Indeed eutectic separation is highly propable but it's just physics not life.

      • by goombah99 ( 560566 ) on Wednesday September 10, 2014 @10:27AM (#47871805)

        Since I seem to be dismissing that paper for trying to use thermodynamics to define the probability of a living system I wanted to quickly add that I am explicitly not dismission it. I'm dismissing the summary that conflating the definition of life with a lower bound on it's thermodynamic probability. Often times thermodynamic bounds are very useful in ruling out how something did not happen and to identify the high probability way something could have happened.

        Take for example, the observation that most complex living systems are beautiful as well. Why are they beautiful to us. I think it is because they visually have organization. And the single most obvious facet of organization are symmetries at large scale. For example, atomically speaking your eyes are very far apart. Yet your body has this beautiful bilateral symmetry.

        THe obvious question is whether symmetries in living systems occur because living systems select for symmetry because there is an evolutionary advantage to it or because of thermodynamics.

        to see this take something simpler. The packing of seeds in a sunflower is optimal in some sense (fibonaci) yet one might believe there's a chance it's just a thermodynamic accident not a careful selection.

        In fact drill down a little more and consider the fact that nearly all proteins in your body form homo dimers that are symmetric.

        an interesting paper
        http://www.ncbi.nlm.nih.gov/pu... [nih.gov]

        comes to the stunning conclusion that this symmetry is not from evolutionary selection! it's overwhelmingly improbable that function can arise from random collisions between proteins, and the only likely way two proteins can collide and form a low energy conformation that last long enough to perform a function is for collisions that form a symmetrical arrangement. Almost all other collisions wont last long enough for the dimer to perform a function (such as catalyzing production of a useful metabolite). Since Natural selection cannot operate on anything that doesn't do something to increase fitness this means that assymetric collisions are completely invisible to the organism. Therefore thermodynmics can rightfully claim that nearly all protein symmetry arrises simply from thermodynamic probability not from natural selection having a prefernce for symmetry. This is not to say that symmetry has no selectable characteristics. It's just that at the molecular level, those selectable characteristics are not required to explain the emergence of symmetry as we observe it. The frequency that we observe symmetric versus asymmetric homo dimers of proteins is exactly the frequency we would expect at random due to thermodynamics.

        Thus the interesting thing about this new work in thermodynamics is it sets a lower bound on the conditions needed for life to emerge. It does not however define the probability of life emerging.

    • There's this "Sun" bombarding the planet with energy, constantly.

      Then take the two-body system given by the Earth and the Sun as the closed system.

      • by geekoid ( 135745 )

        But they aren't.

      • What about the tons of dust and debris that fall to Earth every single day? What about the heat this planet radiates out, the loss of gases that occur naturally?

        We do not have a closed system. Period. You can be ignorant and attempt to argue it all you want, but you will always be wrong.

        Always.

        • You can be ignorant and attempt to argue it all you want, but you will always be wrong.

          But:

          progress in science consists in replacing a theory that is wrong with one that is more subtly wrong -- unknown

      • by drerwk ( 695572 )

        There's this "Sun" bombarding the planet with energy, constantly.

        Then take the two-body system given by the Earth and the Sun as the closed system.

        If it was a closed system the Earth would have cooked by now coming to equilibrium with the Sun - fortunately we have the cold bath of the rest of the universe to which most of the Sun's energy flows, as well as some heat from the night side of the Earth - so it is not a closed system.

    • by Bengie ( 1121981 )
      High energy systems tend to naturally self organize in order to increase the rate of entropy. Life also increases the rate of entropy.
    • It's a fallacy that entropy always increases ON EARTH, and therefore life is impossible to have evolved naturally, because it violates the 2nd law of thermodynamics. That's only true in a closed system, which most definitely the Earth is not. There's this "Sun" bombarding the planet with energy, constantly.

      Stop bringing thermodynamics into biochemical or origin of life questions. It's irrelevant.

      Yes energy is constantly added but without a system to use it it only increases entropy think uv radiation and Dna the energy there disorders the system rather than maintains it.

    • Even in a closed system entropy will not always increase, it can stay the same. The second law of thermodynamics only states that in a closed system entropy never decreases.
  • The bottom line is that according to information theory, environments favorable to life are unlikely to be unusual.

    Except in a universe with billions and billions of galaxies, each containing billions and billions of stars ... some of us assume that, statistically, the 'unusual' happens all the time.

    In the last 30 years our understanding of how many stars have planets has changed entirely. We used to think there would be a small amount with planets and that we were really unique. Now, not so much.

    These co

    • by Jesrad ( 716567 ) on Wednesday September 10, 2014 @09:41AM (#47871383) Journal

      Wait. If they are unlikely to be unusual, then they are likely to be usual. Right ?

    • 'unlikely to be unusual' is a weird way to put it.

      I understand that to be the same as 'likely to be usual', or as one would normally say: 'likely'.

      So environments favorable to life are likely?

    • by geekoid ( 135745 )

      The universe is infinite, thus every unusual thing that can happen is also infinite, just a smaller infinite.

      If we assume particles have a finite ways to be arrange(as it seems) that means there are a small infinite places just like earth, with another you reading the exact same post by another me.

    • by gweihir ( 88907 )

      Sorry, but that is a fallacy. You can very easily have things so unlikely that this universe will not have any instance or only one of them. This happens especially often if you do not know the probability of things.

    • by vux984 ( 928602 )

      We used to think there would be a small amount with planets and that we were really unique. Now, not so much.

      I'm not sure we ever really believed that. Now we just have proof.

      I think a lot of us expected extra solar planets to be common, and that even extra-terrestrial life will prove to be fairly common. But for me, at least, the open questions are how common higher life forms are, and whether 'sentience' is a common evolutionary solution... or relatively rare / unique...

  • We understand entropy, but have we considered that a symmetrical and opposite phenomena could exist and be primarily responsible for creation of life? That is, some property of information to self-organize that leads to creation of life, and later to creation of intelligence?
  • There are a few points along the way where development of life on earth had to go one way, or the other, and was not able to sustain both directions. For example, the chirality of amino acids [wikipedia.org] where the overwhelming majority of them are L forms even though there is no physical restriction on the creation of the D form. Similarly the DNA double helix is right-handed in almost all cases.

    One interesting thing about this is that if we were to find a planet filled with plants made up of D amino acids and left-handed DNA we may find ourselves unable to consume those plants for nutritional value.
  • What? (Score:5, Funny)

    by Grizzley9 ( 1407005 ) on Wednesday September 10, 2014 @09:59AM (#47871519)

    environments favorable to life are unlikely to be unusual.

    How can you not argue against not having that be untrue?

    • by geekoid ( 135745 )

      Because previously it was said:
      "environments favorable to life are likely to be unusual."

      now they know it's unlikely to be unusual

  • by Dimwit ( 36756 ) on Wednesday September 10, 2014 @10:02AM (#47871537)

    I blew my wife's mind the other day when I pointed out that we are literally just a small component of a single, globe-spanning, four billion year long chemical reaction. A single, very long running checmial reaction. It's pretty neat when you think about it.

    • by halivar ( 535827 )

      I blew my wife's mind the other day

      Did you mean to post AC? This is admissible in court, you know.

    • I blew my wife's mind the other day when I pointed out that we are literally just a small component of a single, globe-spanning, four billion year long chemical reaction. A single, very long running checmial reaction. It's pretty neat when you think about it.

      Yep. I've often pointed out that life is like a fire that has the ability to gather its own wood. Ultimately, that's what we are - not a fire per se but a well-controlled chemical reaction.

  • in other words... (Score:4, Interesting)

    by buddyglass ( 925859 ) on Wednesday September 10, 2014 @10:36AM (#47871905)
    This is bad news [technologyreview.com] for humanity.
    • Re:in other words... (Score:5, Interesting)

      by jeffb (2.718) ( 1189693 ) on Wednesday September 10, 2014 @12:05PM (#47873073)

      Nonsense.

      The argument seems to be that, because we don't see "evidence of technological activity" when we look out at the universe, intelligence leading to technological culture must be rare or absent. If an entity or a culture doesn't cause huge, recognizable perturbations in its environment, it must not represent "intelligence".

      Think of an electrical engineer from the 1880s studying the data cables that run through a modern city. He might cut into a cable, expecting to find a wire carrying electrical impulses. Instead, he sees a bundle of glass fibers, glowing brightly if he nicks or breaks them. No tools at his disposal would let him even detect the gigahertz-scale fluctuations in that light.

      For that matter, consider a 1960s "exobiologist" trying to decode an intercepted 2014 video stream. If you told him it was image data, he might look for periodicities that would let him determine rows, columns, and pixels. In an MPEG-compressed stream, he wouldn't get far. Heaven help him if it's DRMed.

      My point: the things we look for as evidence of technological civilization may just be evidence of insufficiently advanced technological civilization. The "filters" we fear -- nuclear annihilation, bioterror, grey goo -- may indeed claim a lot of civilizations, or they may be laughably uncommon. It seems to me most likely that, instead of trying and failing to build space-opera-scope interstellar empires, most civilizations simply grow into something that we aren't yet sophisticated enough to notice.

  • by Baby Duck ( 176251 ) on Wednesday September 10, 2014 @11:30AM (#47872609) Homepage

    a key property that distinguishes living from non-living systems: their ability to store information and replicate it almost indefinitely.

    As Douglas Hofstadter pointed out, it's actually more complicated than merely indefinite replication. It has to allow variance while still retaining the ability to replicate. Sure, there are clones everywhere, especially outside the animal kingdom, and they still considered "living". So the quote is still technically true. But it doesn't capture how immensely more difficult it was for life we observe here on Earth to come about. It also raises an interesting question. Did non-varying life have to come about first, in order to saturate the environment with organic compounds? Did the varying life then come about later, piggy-backing on this enriched environment? Or can you go straight from an abiotic world to varying life?

  • "The new approach is to create a mathematical model ... And interestingly, the predictions closely match what researchers have found in practice"

    Unless the mathematical model was built *before* any of those practical empirical test results, it is not at all interesting or surprising that the model happens to match the pre-existing data.

  • Related work:

    http://arxiv.org/abs/1209.1179 [arxiv.org]

    surprisingly no references between Adami and England.

    "Self-replication is a capacity common to every species of living thing, and simple physical intuition dictates that such a process must invariably be fueled by the production of entropy. Here, we undertake to make this intuition rigorous and quantitative by deriving a lower bound for the amount of heat that is produced during a process of self-replication in a system coupled to a thermal bath. We find that the m

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