Public Library of Science Launches 101
limbicsystem writes "The first issue of the free journal Public Library of Science Biology hits the presses tonight. With Lawrence Lessig on the Board, the PLOS team are taking the Creative Commons to the world of science publishing and hope to compete with the big-name journals Science and Nature. The move towards freely-available scientific journals is supported by major funding bodies who are tired of seeing their grant money spent on subscriptions to commercial journals that can cost thousands of dollars a year. PLOS-Biology is available online at plos.org.
The inagural issue has an
essay by the executive director of the creative commons, Glen Otis Brown. Oh, and it's all running on Linux ;)"
Re:I like the sound of it. (Score:3, Insightful)
I was wondering why the parent article was modded "Troll", so I followed the link. It's a web site advocating the pseudo-scientific, crypto-creationist "Intelligent Design" nonsense.
If you haven't stepped in this dogpile before, "Intelligent Design" basically claims not to necessarily advocate a God, but does advocate the need for a fore-thinking "designer" to account for the complexity of life. It ignores
Re:I like the sound of it. (Score:1)
Unfortunately I have - many, many times and it smells worse each time. Every web based science forum I've seen seems to attract hordes of these demented parrots trotting out the same turgid nonsense over and over again - only retreating into hysterical insults and emotional outbursts when their arguments have all lengthily and painstakingly been torn apart by the same old counter-arguments for the gazillionth time. The next day they return and start all ov
Re:I like the sound of it. (Score:2)
Thanks again, it's always good to read something that makes ya think.
Re:I like the sound of it. (Score:2)
Creationists would point to the eyes, and ask how such a marvelous and complex device could be the product of "random" evolution; but now scientists have simulated the development of the eye and shown it actually doesn't take that any forethought or much time (in evolutionary terms).
Who has simulated the development of the eye and found the results you describe? What were the conditions of the simulation?
Re:I like the sound of it. (Score:2)
See "A Pessimistic Estimate Of The Time Required For An Eye To Evolve", D.-E. Nilsson and S. Pelger, Proceedings of the Royal Society London B, 1994, 256
Or a summary here [don-lindsay-archive.org].
Re:I like the sound of it. (Score:1)
I'm a Urantia Book reader. I don't consider the belief in an omnipotent god, who transcends time and space, to be an act of logical desperation. I also tend to thump the UB and say "it says here that logic cannot prove or disprove matters of spiritual truth". :-) I would
Tropical Illness (Score:2, Funny)
Rus
Peer review and perception (Score:4, Insightful)
Because most people can already get to publication quality work even using such outmoded technology as MS word, it seems that these journals do not necessarily have to exist to typeset papers, as in the old days.
As far as I see it, the biggest impediment to a successfully open source journal is peer review. The quality of the journal has to be insured. This does not mean that people get paid to review papers (I wish...), but rather that there has to be a knowledgeable editor who knows who knows what in the field, and can put together different reviews to actually decide if the paper is publishable or not. Again, often this person can be underpaid, but there does need to be some sort of staff. It will be interesting to see how PLOS deals with this.
Once these problems have been overcome, the journal needs to be seen as a good place to publish. Reputation is critical to the success of a journal, and it depends mostly on the quality of papers that it publishes. There are many ways to rank journal influence, but most have to do with how often papers from that journal are cited in other scientific papers. Hopefully, with more access, PLOS will have an edge here, since you could send an electronic copy to all your colleagues completely legally.
Finally, it will be interesting to see how many other fields are added. Will they stick to the biggies, like genetics and medicine, or will they head off into the smaller disciplines.
I for one, am hoping for the this project to succeed.
There's no question it will succeed. (Score:1, Insightful)
What we need is a bit more activism on campus. I don't see why kids are so conservative these days. You'd think we'd be seeing people scan journals and share them on-line, but sadly that's not the case.
Academic journals are one of the saddest scams in history. The authors aren't paid to write, they've got to write to get tenure or even a position for that matter. The journals themselves claim they're just covering costs, but the libraries are expected to
Re:There's no question it will succeed. (Score:2)
PLoS publication costs for authors are high (Score:5, Interesting)
Re:PLoS publication costs for authors are high (Score:1)
Re:PLoS publication costs for authors are high (Score:2)
Does that mean researchers from third-world countries are indirectly excluded from publishing there? How many of them might decide that instead of trying to publish the results in PLoS their $1500 would be better spent on hiring a research assistant for a year (and publishing in some lesser journal)?
Scientists with limited funds will not be excluded (Score:1)
Why PLoS has to charge (Score:2)
Because PLoS is an effort to bring research to the general public or at least to more people than has generally been the case, it can't get its operating fees from charging people to view the articles online, the way Nature and Science do. Because those journals lock down their content so tightly, I can't share a paper with friends.
For example, I'm a member of an online community that likes to talk abo
$1500 only if you can afford it (Score:4, Interesting)
One could view the fee as a "suggested voluntary donation", however scientist are generally not allowed to spend research grants on charity. I know I'm not, I tried to make my university donate money to the FSF as a thank for the software we use. We ended up buying overpriced stuff from them instead.
By phrasing it this way it will be a lot easier to get the payment accepted. It probably also put a higher moral pressure on the submitters to pay if they can.
Re:$1500 only if you can afford it (Score:2)
Page charges are typically requested by even for-profit journals. This appears to be an online analogue to that. Many grants have a line item for this very thing. In every journal I've published, they've been optional, but I'm not sure what percentage of researchers actually pay them.
Re:PLoS publication costs for authors are high (Score:4, Interesting)
Re:PLoS publication costs for authors are high (Score:1)
...unless i'm overrating you.
Re:Peer review and perception (Score:1)
Re:Peer review and perception (Score:3, Interesting)
Actually, it's the smaller disciplines (in science anyway) that have some of the highest costs. Brain Research, for example, runs $10,000 per year, last time I checked. Part of the reason for the high cost is the limited audience to spread the cost of publication around (it costs less per copy for 100,000 subscriptions than for 5,000). Related to that is the skyrocketing costs of science jou
Re:Peer review and perception-Failed business mode (Score:2)
Unfortunately, when a journal leaves the market, we are all negatively impacted.
(No, I don't see libraries as the ones going out of business. They seem to be more fluid and responsive to their market. :-) )
Re:Peer review and perception (Score:3)
I'd like to point out that the field of Neuroscience now qualifies as Pretty Darn Big, and, moreover, it is moving Pretty Darn Fast. This is why Elsevier and others can charge hugely for their journals: the demand *is* there, and the cost of *not* having Brain Research or (to pick a non-random example) the Journal of Comparative Neuro
Re:Peer review and perception (Score:2)
This is exactly where PLOS comes in. How about they expand into Brain Research's territory? Of course, first you have to convince the authors it's a better idea to publish in PLOS than in Brain Research.
Nothing like a little competition to bring reality to a market, eh?
Re:Peer review and perception (Score:2)
Actually, if you want "psychotically expensive institutional online access", the journals to pick on are anything by Cell Press. If PLOS could replace Neuron, the world would be a much, much less expensive place. :-)
Re:Peer review and perception (Score:2)
Likewise, journals save lives... at least in the medical profession. Working in a university hospital we get the worse cases, and the rarest cases--and we reference the literature frequently. Just last week I was getting one of my buddies to translate an article from German...
The medical journals, at least, are making this work by giving discount rates on subscriptions... or charging huge fees if you need access to an article on a one time basis. Thus, the hospita
Re:Peer review and perception (Score:1)
Only the ones that aren't free.
Wikipidia is a good example of a good quality, free form content/knowledge baise.
http://c2.com/cgi/wiki?WikiPedia
"As far as I see it, the biggest impediment to a successfully open source journal is peer review."
As far as i see it, this it totally wrong. So long as the journal is made public during the peer review process, and the actual "peers" (the readers) can take part in the process. (maybe a standard can be made for displaying
Re:Peer review and perception (Score:2)
Re:Peer review and perception (Score:2)
http://www.ecs.soton.ac.uk/~harnad/intpub.html
Re:Peer review and perception (Score:2)
I wouldn't worry about it. For example, as your peer, I would like to point out that the verb you are looking for is "ensured", not "insured". Some other peer will no doubt come along and note that "insured" is a permissible, though not preferred, term for the usage you have in mind, and so on.
The system breaks down, however, for truly awful misspellings like "red
Create two sections..peer-rev & Yet-too rev. (Score:1)
Peer Review solution is obvious! (Score:1)
Re:Public Libraries are important (Score:1, Offtopic)
How the [please insert any popular vulgarism] do people believe information is to spread rapidly through an impoverished polulation and, as from what the CNN article insinuates, an active mob
Others (Score:2)
Also, check out one of
there are still costs. (Score:1)
Re:there are still costs. (Score:2)
I too believe that $1500 is a relatively small amount of money to maintain not only ownership of your work, but also ensuring that your work will continue to be available. My comment related to costs however was directed more towards actual printing costs associated with making color pla
conflicting information (Score:2)
http://creativecommons.org/learn/licenses/ [creativecommons.org] http://www.plosbiology.org/plosonline/?request=sli deshow&type=figure&sici=journal-pbio-0000009-g 001 [plosbiology.org]
Look at "ShareAlike" and Non-commericial. The symbols are wrong.
Also why did they make the "ShareAlike" symbol very similar to CopyLeft? It confused when I first saw it.....
Re:Not really informative, but... (Score:2)
The counter argument is: collecting information, writing and publishing high quality work is extremely hard and expensive. The should be in the quote is an opinion. The counter argument is that research is expensive; so we need a market approach to help determine how the money goes to research to help determine which research projects gets funded. Expensive journals
This is really really important. (Score:5, Informative)
Listen: Right now, basically everything published in a journal in the last 50 years is *owned* not by scientists but by publishers. You might not realize this if you never published, but journals and conferences make you *assign the copyright* for your paper to the publishing company. Not license it to them for publication (this would be reasonable), but *give* them the copyright and lose your own rights to publish and distribute the work. Here's a sample agreement from the IEEE [ieee.org]
This is seriously fucked up. It means that, if the publishers wanted, they could close up shop and never let anybody see the archive of scientific papers again. It means they can sue you if you publish your own paper on your web page, or make copies of it for a class you teach!
Computer scientists, being handy with the web, typically publish their papers and then put them up on their websites, playing "civil disobedience." (Some journals have even caved to this, and part of the copyright assignment you actually get licensed to put the paper on your web page.) That means there's already a sort of PLOS for computer science: an index of Computer Scientists' web pages and publications at citeseer [nec.com]
The culture in other sciences, like biology, is really different. These guys write, sign the form, and then pay for a few paper copies of the article that they can give out if requested.
The way it's happening in CS is one way to free science. It seems to be working. But for those who don't actively maintain web pages and don't have a culture where the web is the place to go to look for papers, the PLoS seems like a good way to make this happen. I really, really hope it succeeds.
Re:This is really really important. (Score:2)
If you're not a Web whiz, you probably know (or share an elevator daily with) one who could help. Your institution could get a bit of PR mileage out of setting up a repository of archived papers by its member
Re:This is really really important. (Score:2)
Have you tried this? There are two different parts of the machine here: the program committee, who decides what papers are accepted, and the publishing company, who handles the forms. I've never tried it, but the publishers don't really care much about the papers, so it
Re:This is really really important. (Score:2)
Hmmm, I've seen plenty of biologists who do this, including my former boss, and none of them have been busted for this (so far). However, these usually tend to be fairly computer-savvy people already.
Anyway, PubMed is already a much better way to find publications of interest in biomedical research than any other mechanism, since it's very well curated and co
Re:This is really really important. (Score:2)
The physicists were actually way ahead [arxiv.org] of the computer scientists here. BTW, the world-wide web was invented at a physics lab
BTW, I have never, ever, ever heard of a scientist hearing even a peep of complaint from a journal about distributing reprints and preprints electronically. It's just what everyone does.
Indexing (Score:2)
Re:Indexing (Score:2)
Not quite a Microsoft-free zone (Score:1)
For more on the ever-expanding open access movement in science, see Peter Suber's excellent blog: Open Access News [earlham.edu].
Also, check out the other major open access publisher, BioMed Central [biomedcentral.com]. BioMed Central launched in 2000 and has already published more than 3000 peer reviewed biomedical research articles. [biomedcentral.com]
A modest proposal... (Score:3, Interesting)
Not only should these articles be made availble on the web to anyone who wants to read them, but to encourage the sharing of scientific ideas, persons ought to be able to post commentary on each article in real time, avoiding the typical several week tuern-around times required to mail letters to journals.
Of course, all commentray letters are not created equal, which could make for a plethora of uninspired or even falacious commentary. To counteract this tendency, I think that those persons who, over time, demonstrate that they have "Insightful" or "Interesting" (or even "Funny") comments to make, be allowed to make other persons' comments more or less visible by awarding them positive or negative points.
In turn, those awarded the most moderators' points ("mod points") would get a limited number of "mod points" (say, 5) to apply to future comments, perpetuating the cycle and allowing the best commentary on each article to rise to the top -- sort of a redistribution of "good" and "bad" karma.
While I'm not aware that such a system has ever been tried before, I cannot imagine how it might be abused, and I'm sure it would act only to stimulate a flowering of scientific discourse.
Comments, anyone?
Re:A modest proposal... (Score:2)
Also, there is a scientific popularity contest already out there Faculty of 1000 [facultyof1000.com]
Other online journals (Score:3, Informative)
Re:Other online journals (Score:2)
It might seem to be a bit of a tangent, but I want to mention something that I think is fairly important, if minor, detail about these on-line journals which is the format they are consumed in.
While it's fine to get the gist of what's going on on-line, I perfonally prefer to print them out. With a refillable ink-jet model that prints front and back simulta
Thanks Slashdot... (Score:1)
irony of scientific publication on internet (Score:3, Informative)
arXiv.org e-Print archive (Score:2, Informative)
Re:arXiv.org e-Print archive (Score:1)
One of hundreds (Score:1, Informative)
Everyone here is aware, I'm sure, that there is really no such thing as "free" in publishing. Many people and hundreds of institutions are contributing their time, resources and money trying to break the stranglehold of the entrenched publishing industry.
The only way open access can ever really succeed is
A good thing, but not a first. (Score:2)
A big problem with PLoS is that an author is charged $1500 (!!!) to publish in the journal. This is going to bar a lot of people who lack significant fu
Re:A good thing, but not a first. (Score:3, Informative)
You just aren't thinking very hard about this then. Teh first journal in the PLoS line-up is PLoS:Biology; the vast majority of articles published here, if they really do make it the equivalent of Science/Natu
Re:A good thing, but not a first. (Score:2)
/joeyo
Re:A good thing, but not a first. (Score:2)
Still need other journals (Score:1, Insightful)
You'll never see anyone who's doing research at a university or in the private sector cancel their subscription to any of the major journals, even when there's alternatives out there. They're too essential.
It might give a regular person a chance to read up on some ongoing research, but they can already do that at the library.
Re:Still need other journals (Score:2)
The mainstream journals are useful only in-so-far as they are widely available and widely read. The really big ones have had 100 years or more to gain momentum and get to where they are today! Journals like PLoS Biology have the potential to be FAR more widespread.
Much like Open Source software, it is only a matter of time.
Wonderful... (Score:1, Interesting)
Before people go wild about this, remember that $1500 is actually quite a lot of money, and more than many, if not most, other journals. Physical Review D, one of the most (if not the most) respected journal in its field, for example, has no page charges. It charges $2,700 for a one year online subscription, but guess what -- if your department publishes more than one paper a year (I would say a good de
Re:Wonderful... (Score:1)
At least three of the PLoS editors have worked for Nature in the past. The main editor, Vivian Siegel worked for Cell - owned by Elsevier
But then I should imagine that when they worked for Nature they were meddlesome and published "sexed up" rubbish....now they work for a free access journal they will seen as brave, visionary and skilled.
or could it just be that they will work for whoev
A Keystroke Koan for our Open Access Times (Score:3, Informative)
The launching of PLoS Biology -- http://www.plosbiology.org/ [plosbiology.org]-- an outcome of Harold Varmus's highly influential 1999 Ebiomed Proposal -- http://www.nih.gov/about/director/ebiomed/ebiomed. htm [nih.gov] -- is a very important event for research and researchers, for two reasons:
(1) It is another step forward in providing open access to peer-reviewed research, a major step.
(2) It both demonstrates and will further stimulate the research community's growing consciousness of both the need for open access and the possibility of attaining it.
It is all the more important, therefore, that on this auspicious occasion for the open-access publication strategy (BOAI-2) we not forget or neglect the other, complementary open-access strategy, open-access self-archiving (BOAI-1) --http://www.soros.org/openaccess/read.shtml [soros.org] -- particularly because systematically supplementing BOAI-2 with BOAI-1 has the power to bring us so much more open-access, so much more quickly.
A KEY-STROKE KOAN FOR OUR OPEN-ACCESS TIMES
Here is an extremely conservative calculation that will give you an (I hope unforgettable) intuition for the importance of not neglecting the other road to open access:
If, in addition to signing the PLoS open letter (pledging to boycott toll-access publishers unless they become open-access publishers http://www.plos.org/support/openletter.shtml [plos.org]), not even all the 30,000 PLoS signatories had self-archived not even all their own toll-access articles, nor even the 55% corresponding to the proportion of blue/green (self-archiving-friendly) toll-access journals -- http://www.ecs.soton.ac.uk/~harnad/Temp/rcoptable. gif [soton.ac.uk]-- but only the 18% of signatories corresponding to the proportion of postprint-green journals had self-archived just one of the articles they had published in just one of those toll-access journals, the resulting 5400 articles that had been made openly accessible by this act would still have been 5 times as many as PLoS Biology will publish in 5 years (1200 articles, assuming 20 articles per PLoS issue at $1500 a pop). And at the cost of only a few keystrokes more than what it cost to sign the petition.
Yet all researchers did was sign the PLoS open letter, and then wait, passively, for toll-access journals to turn into open-access journals in response to the petition. And now researchers seem ready to wait yet again, passively, with the popular press now cheering from the sidelines, for more open-access journals like PLoS Biology to be created or converted, one by one.
As we make our estimate less conservative and arbitrary, and scale it up first to 55% of all annual biology articles, and then beyond that, to the many journals that will support self-archiving if asked, I hope the scales will at last begin to drop from the eyes of those who have not yet noticed the tunnel vision and paralysis involved in focusing only on open-access publishing, when it is *open access* that is our target.
And perhaps then we will be less surprised that the 23,500 toll-access publishers did not take our boycott threat seriously -- and, by the same token, that they still have no reason to take the handful of open-access journals created since the beginning of the '90s (of which PLoS Biology is about the 543rd) seriously -- if that's all we're prepared to do to demonstrate our need for and commitment to open access for our research, as we just keep sitting on our hands instead o
Bad for your health? (Score:1)
Re:Great idea for destroying our economy. (Score:2)
Linux? (Score:2)
Running on Linux, are you sure? Last night I did a 404 test on it, and it came back with an IIS error message. Maybe that's why it seems to have come to its knees so easily today?
Re:Linux? (Score:2, Informative)
http://biology.plosjms.org/nosuchfile
And you get this error which leads me to think this the site is not "all" running on Linux:
The page cannot be found
The page you are looking for might have been removed, had its name changed, or is temporarily unavailable.
Please try the following:
* If you typed the page address in the Address bar, make sure that it is spelled correctly.
* Open the biology.plosjms.org home page, and then look for links to the information you want.
* Click th
Is this site running Microsoft's IIS, or what ?!? (Score:2)
Here's the text of the page I got when
I tried to download the PDF's for the
article on monkeys that can operate a
game without moving their hands:
"The page cannot be found
The page you are looking for might have been
removed, had its name changed, or is
temporarily unavailable.
Please try the following:
Make sure that the Web site address displayed
in the address bar of your browser is spelled
and formatted correctly.
If you reached this page by clicking a link,
contact the Web site admi
Re:Is this site running Microsoft's IIS, or what ? (Score:2)
that brought the 404 message [from MS IIS?]:
http://www.plosbiology.org/pips/plbi-01-02-S-carm
Re:Is this site running Microsoft's IIS, or what ? (Score:2)
> the URL of the document we tried to get,
> that brought the 404 message [from MS IIS?]:
>
> http://www.plosbiology.org/pips/plbi-01-02-S-carm
(no was in the URL we used; & 'don't
know why one appeared in our reply-post...?)
The real issues of PLoS (Score:1)
Suckers. (Score:1)
Deep Disanalogy Between Open-Access & Open-Sou (Score:1)
http://www.ecs.soton.ac.uk/~harnad/Hyper m ail/Amsci
On the Deep Disanalogy
Between Text and Software and
Between Text and Data
Insofar as Free/Open Access is Concerned
Stevan Harnad
It would be a *great* conceptual and strategic mistake for the movement
dedicated to open access to peer-reviewed research (BOAI)
http://www.soros.org/openaccess/ to conflate its sense of "free"
vs. open" with the sense of "free vs. open" as it is used in the
free/open-source software movements. The two senses are not