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Patents Science

New Technique Makes Most Gene Patents Irrelevant 225

Billy the Mountain writes "This Scientific American article, Legal Circumvention, describes a technique for circumventing gene patents whereby living cells are coaxed into expressing genes, especially those genes currently held under patents. Although, would-be exploiters of genes are prevented by patent restrictions from constructing a particular sequence and replicating it, patent law cannot be enforced in instances where an existing cell or organism is caused to express any of these patented genes and proteins."
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New Technique Makes Most Gene Patents Irrelevant

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  • Yeah, that shows there's a big problem with our country's ethos...

    "Hey, isn't that auburn hair? My company patented that! You owe us $500,000 or else you need to cut off that hair."

    • well we need to jump on our congress critters and wuickyl make sure they dont let someone come in and patent out genes AGAIN covering this process...
  • by zCyl ( 14362 ) on Tuesday June 18, 2002 @10:00PM (#3726382)
    And now science routes around damage too.
  • Machining Parts (Score:4, Interesting)

    by lostchicken ( 226656 ) on Tuesday June 18, 2002 @10:01PM (#3726387)
    So, if I make a computer design a part using what it is supposed to do (push levers, bend things, twist things, etc.), under a set of parameters (size, material, etc.) and feed that into a CNC mill and out came a patented part, would that be okay?

    I think not...
    • That reminds me of this number:

      485650789657397829309841894694286137707442087351 35 79240196520736686985134010472374469687974399261175 10973777701027447528049058831384037549709987909653 95522701171215702597466699324022683459661960603485 17424977358468518855674570257125474999648219418465 57100841190862597169479707991520048667099759235960 61320725973797993618860631691447358830024533697278 18139147979555133999493948828998469178361001825978 90103160196183503434489568705384520853804584241565 48248893338047475871128339598968522325446084089711 19771276941207958624405471613210050064598201769617 71809478113622002723448272249323259547234688002927 77649790614812984042834572014634896854716908235473 78356619721862249694316227166639390554302415647329 24855248991225739466548627140482117138124388217717 60298412552446474450558346281448833563190272531959 04392838737640739168912579240550156208897871633759 99107887084908159097548019285768451988596305323823 49055809203299960323447114077601984716353116171307 85760848622363702835701049612595681846785965333100 77017991614674472549272833486916000647585917462781 21269007351830924153010630289329566584366200080047 67789679843820907976198594936463093805863367214696 95975027968771205724996666980561453382074120315933 77030994915274691835659376210222006812679827344576 09380203044791227749809179559383871210005887666892 58448700470772552497060444652127130404321182610103 59118647666296385849508744849737347686142088052944 3

      An illegal prime number :) [cmu.edu]
      • What we need now is a competition to find the smallest illegal prime...

        Hopefully one day an already established constant can become illegal for also being a decoder, etc. that'd be great :-)
      • From the link:
        It's "illegal" because publishing this number could be considered trafficking in a circumvention device, in violation of the Digital Millenium Copyright Act, 17 USC 1201.

        I always get a kick out of reading that USC code. Anyone else see the movie with Jonathan Silverman, Helen Slater, and Martin Landau, "12:01"? Day repeating, like Groundhog Day, but with a science to it.

        Seeing the USC 1201 constantly reminds me that at this very moment, we could already be trapped in the "time bounce" (the wonderful technical term ;-).

    • Re:Machining Parts (Score:2, Insightful)

      by LordKronos ( 470910 )
      The difference is that the cell or organism is a living thing. In order to safeguard against companies patenting cells/genes/dna/whatever and then claiming any type of property rights (you cant transplant that organ unless you pay me a fee...I have a patent on the genes in that heart), the patent is only allowed to cover creating the gene/dna, and not cases where the gene/dna creates itself.
    • Re:Machining Parts (Score:4, Insightful)

      by EllisDees ( 268037 ) on Tuesday June 18, 2002 @10:18PM (#3726495)
      Natural processes cannot be patented. A CNC mill is not natural, so I don't see what point you are trying to make.
      • It's not a natural process if the process is put in motion by an engineer to build a patented part.
      • Natural processes cannot be patented. A CNC mill is not natural, so I don't see what point you are trying to make.
        Now there's an interesting thought - what happens when science reaches the point where we can have the biological equivalent of CNC mills? :)
  • Has Sangamo BioSciences patented their zinc finger protein transcription method?
    • Maybe (I suppose, they have). But patenting a special technique to make an organism express a gene isn't as problematic as patenting the gene or the protein itself. You might find your own technique to activate the same gene without infringing Sangamo's patent. And if I correctly read the original article, there are already several differing techniques used in the pharma industry.

      Bye, Pat

  • Hmm... (Score:3, Informative)

    by smoondog ( 85133 ) on Tuesday June 18, 2002 @10:04PM (#3726405)
    But the changes required to avoid the patents, in my opinion, are likely to be more expensive than licensing the patent itself. It is very difficult to find a gene product that can be used without cellular purification....

    -Sean
    • by sam_handelman ( 519767 ) <samuel...handelman@@@gmail...com> on Tuesday June 18, 2002 @10:49PM (#3726639) Journal
      In general, biotechnology companies are flush with cash. So, you come to them and ask "can we license your patent for a gene?"

      Well, they have no friggin' idea what that license is worth. If they need money, they say "yes." If they're flush with venture capital, and even in this downturn, they are, they just say "no." If you come back with a ridiculous offer, they'd take it anyway, but they just won't deal for a reasonable price because, to them, it's a poor gamble. They've no reason to sell these things, and they know they've got value - because you want 'em. Alternatively, they may be using that gene patent to maintain a monopoly on some drug or treatment. No way they're going to license it to you (for a reasonable amount, once again) so that you can compete with them.

      There was a plan by a colleague over at Cornell to do something pro-social with genetic engineering - I think it involved genetically engineering some tropical fruit (Mangos?) to retard spoilage. Whatever it was, it solved an economic problem for poor farmers on Pacific islands. Anyway, they had a way to do it but it involved a bunch of patented genes and processes. Funny thing was, these patents were sitting idle, unused by their owners. However, the owners of these patents wouldn't sell licenses because they had no idea of the value of what they were giving out. So, when in doubt, they refused.

      A lot of these gene patenting outfits are (largely failed, because they've patented genes no one really wants) extortion rings. They're actually easier to deal with, since their gene patents are often legally weak, and they don't want to price themselves out of the market.

      Discussing this technology itself - this isn't new. We new about zinc finger proteins when I took freshman biology, that would have been seven years ago.

      Sangamo BioSciences in Richmond, Calif., has made about a fourth of them to bypass patent restrictions by using its "zinc finger protein" transcription factors, proteins that turn genes on and off.

      The implication of this sentence is that zinc finger proteins are an innovation developed or discovered by Sangamo. This is not the case.

      Athersys didn't develop their technique, either (not implied by the article,) although I've only heard of it used in the past to turn random genes OFF.
      • One problem I think a lot of people have is that they believe there should be an objective rule by which all decisions should be made. It's probably a result of the deterministic nature of science and especially computer science. With business, though, there are so many factors to consider before making a business decision that it is simply impossible to take all those factors into account all at once without fudging some considerations.

        A company loath to license patents is certainly well within their rights when facing a competitor who threatens to use the licensed patent to take away profits from the patent holder. If a biotech company came up with a cold remedy in their research and it was immediately useful in their serums, they would be fools to license the patent to another cold medicine-making company. However, if someone saw in the patent a path that could possibly lead to the cure for emphysema and needed to license the patent in order to build upon the original research, the company (whose main business is making cough rememdies) would be ethically challenged if they didn't license the patent. In the cases you cited above, the companies acted unethically, abusing their patents by not using them and not allowing them to be used.

        Patents are meant to allow the creators a way to make a profit on their hard work and to facilitate the advancement of science by encouraging patent reuse instead of constant reimplementation. When a company does not use the patent for either of these purposes, the patent is worse than worthless because it actually becomes an hindrance to scientific progress.

        A government-based arbitration system to whom a scorned patent licensee-to-be can appeal and have their case reviewed by a panel of qualified judges would provide the necessary Subjective viewpoint necessary to make patent licensing decisions on a case by case basis. The best decisions would be those that sought to properly recompense the patent holder without stripping the licensee dry.

        Obviously this has the possibility of misuse written all over it, but so does the legal system. It also smacks of socialist tampering, but in reality it is simply an extension of the patent concept of promoting the arts and sciences.

        The concept of patents is not broken, only the system used to award them and the companies that hoard them for no use but to crimp research areas. A system that could arbitrate disagreements subjectively would go far in prying open patents that are closed for no reason. Such a system could have opened the door to your colleague's mango research project and made a decent return on investment for the patent holder. Unfortunately, no one has the new mangoes, and the company has gained nothing from their patent.
        • Patents are meant to allow the creators a way to make a profit on their hard work and to facilitate the advancement of science by encouraging patent reuse instead of constant reimplementation.

          No. In America at least, patents are:

          To promote the progress of science and useful arts, by securing for limited times to authors and inventors the exclusive right to their respective writings and discoveries.

          (The Constitution of the United States of America, Article 1, section 8) [cornell.edu]
          • Thanks for the link.

            Can you tell me how my interpretation contradicts the letter of the law?
            • You said, "allow the creators a way to make a profit on their hard work"

              The letter of the law says nothing about financial profit. Profit can only be seen as a possible by-product of the temporary monopoly that can be granted in this case.

              Once people start thinking in terms of patents and copyright being there to generate profit for inventors and authors, laws such as the DMCA start to be passed.

              I think on the whole, we probably agree with there being a problem of patents being used to stifle scientific advancement. The thing is, though, copyrights and patents are being routinely used to simply keep the cash flowing in.

              Look at what's happening now with crippled CD's [slashdot.org]? Or the Bnetd fiasco? [slashdot.org].
  • by Your_Mom ( 94238 ) <slashdot@i[ ]smir.net ['nni' in gap]> on Tuesday June 18, 2002 @10:07PM (#3726420) Homepage
    Is it just me or does anyone see this evolving into a Copy Protection cat-and-mouse game? For example: Company A creates sequence, somehow circumvents this way of showing the sequence, then releases it, only to have Company B circumvent their circumvention, etc etc etc. Sorta like the Lotus 123 Copy protection game back in the late 80s(?)

    Or worse, Company A not release their cure for cancer until they have found a way of having it not be undone by this technique?
    • But, um... (Score:2, Funny)

      by hackwrench ( 573697 )
      we have the DMCA now... clearly the technique is a Digital copy protection circumvention method.
    • Sorta like the Lotus 123 Copy protection game back in the late 80s(?)

      Yes, and you are the floppy disk.

    • > Or worse, Company A not release their cure for cancer until they have found a way of having it not be undone by this technique?

      This sentance shows that you've bought the propoganda that the pro gene patenting companies have been spinning. Gene patents are not drugs, they may be useful for creating drugs, but an actual drug would be independently patentable. In fact, the existence of gene patents simply makes it impossible for anybody else to develop the drugs unless they pay extortionate fees to the carpet baggers. It's a lot easier to obtain a gene patent than to figure out what to do with it.
    • I don't know how seriously you were taking yourself, but be scared. Some drug companies have already produced gene therepy based durgs, but haven't released them because they want to find a way to turn off the genes after a short while. They want to force users to take a pill every day like they do with current drugs so that they can maintain their current revenue model, so they're trying to make a permanant solution more temporary. Similar techniques are being used to 'obfucate' the drug in order to make it more difficult for other companies to copy.

      And you thought doctors and scientists cared for peoples well being...
      • Doctors and scientists, the vast majority of them anyway, do care about people's well-being. The people who don't care are the suits who run big pharma (and everything else health-care related these days) who, unfortunately, tend to give the doctors and scientists their marching orders.
  • by Lictor ( 535015 ) on Tuesday June 18, 2002 @10:07PM (#3726423)
    Don't worry, I'm sure 'big pharm' will have E. coli and friends all classified as circumvention devices. Better start scraping that bacteria out of your stomach, lest Pfizer come knocking on the door...
    • You laugh (I laughed too :) but while the DMCA may not be the tool, if there's a claim to profit to be staked and defended, they'll defend it with lawyers and lobbyists and everything money can buy.

      Personally, I'm frightened of the fact that the "whatever a living organism produces can't be forbidden" idea, because that brings basic biological freedoms against the profiteers, and the battle lines are drawn.
      • You are 100% correct. As is human nature, I made fun of something that frightens/upsets me.

        I guess, deep down inside, I can't fathom just how stupid our lawmakers are that they continue to legislate and adjudicate on matters which they are completely ignorant. If I attempted to practice law, I'd be arrested and charged... but it seems its OK for elected officials to make decisions about issues where they have NONE of the requisite background whatsoever. This worked well hundreds of years ago when it was possible for one person to be reasonably well educated in a truly generaly sense...

        I suppose my secret hope is that someone will finally realize, hey.. I really don't know enough about this to be [making new law/interpreting old law in this context/issuing a patent for this] and make a move towards maybe changing the system. I suppose thats pretty optimistic though (where `optimistic' is read `outrageously naive'.

        In the end, as you pointed out... we're a cash-ocracy. Money == Power. Period. And we all know that the big pharmaceuticals companies aren't exactly strapped for cash...
  • So much wasted time (Score:3, Interesting)

    by ObviousGuy ( 578567 ) <ObviousGuy@hotmail.com> on Tuesday June 18, 2002 @10:10PM (#3726437) Homepage Journal
    So much time is wasted trying to duplicate the efforts of others or finding ways to subvert others' research.

    Wouldn't it make more sense to license the technology (yes, even genetic enhancements) and build upon it rather than trying to redo it from scratch?
    • Apparently not. Or they would probably do that.

      Wouldnt it make even more sense to not grant patents on genes in the first place, since rather than promoting progress they appear to throw up roadblocks that have to be worked around?
  • It's really too bad that anti-circumvention legislation hasn't yet been passed for genomics.

    This kind of technique, clever as it is, will most certainly stifle innovation in the biotech industry as companies and investors will choose not to fund promising research because they will understand, more clearly than ever now in an era of DeCSS and Kazaa Lite, that any yahoo using this technique will be able to reverse-engineer a carefully developed gene sequence simply and cheaply.

    It's a good thing I don't have Parkinson's disease, or another serious illness that genomic therapy might be able to solve, given a few more years and the environment of innovation necessary to promote such promising research. Investors will simply take their money elsewhere, and the great cures of the twenty-first century will go unfound. By the time I'm old enough to need such therapy (I'm only 41) I suspect this unwise loophole will have been closed.

    • I hope you enjoy the latest version of my long running tirade.

      Let us say, just for the sake of argument, that a method of extracting or purifying a gene consists of an invention, worthy of patent, in and of itself. Let us identify two things: 1. The goal it accomplishes, 2. the unique advances made to achieve that goal. Keep this in mind as I raise the next point.

      Now, let us consider two microprocessor designs, each of which is patented seperately; an Intel 8286 and a Motorola 68020, say. Let us identify two things: 1. The goal each of these devices accomplishes (which are, I will assume from here on out, the same,) and 2. the unique advances each devices incorporates in an effort to achieve that goal.

      So, Intel has patented an arrangement of transistors and other components intended to do digital computations; it generates less heat per fetch-execute cycle than its predecessor the 8186(I don't actually know that - I'm just assuming). Motorola then comes along and patents another microprocessor design which is totally different, but it, too, generates less heat per cycle than it's predecessor (the 68010, if I remember correctly). Has Motorola violated Intel's patent on processors that generate less heat? Has AMD violated Intel's patent on processors that are fast? Cheap to manufacture? No; in order to violate Intel's patent you need to replicate (at the very least) some identifiable element of their unique design.

      Back to genes. Amgen has patented a means of achieving a desired end - the purification of some protein. If I come along and achieve the same end, by some other technique, I'm violating their patent. EVEN IF, and this is important, I use none of their actual inventions at all! I am violating their patent because I am seeking the same end.

      This article highlights a practical fallacy in gene patenting (as opposed to an intellectual one). Genes, which are not the only important kind of DNA, are impotant only because they make proteins. Therefore, in order to make gene-patenting worthwhile, you have to control the protein product. In the case of a gene that makes something found in normal healthy people this is an absurd notion - not that this will stop Amgen from trying.

      Patenting genes that cause diseases is a seperate intellectual fallacy that deserved coverage in it's own right.

      This is like patenting the act of killing germs. If a disease is caused by an abnormal (mutant) protein, than the only true cure is to fix that protein - replace it with functional protein, or remove those cells generating the harmful protein, according to the particular condition. The same argument applies to gene-products (proteins) that cause elevated risk for cancer, heart disease and the like. A patent on the gene is basically a patent on all possible cures for that condition/predilection. A gene that causes a predilection for breast cancer should be viewed as a condition in and of itself (which needs to be at least treated,) and not as some part of a particular treatment for breast cancer.

      Finally, I should say our genomes, not just collectively, but individually, are the property of the human race. In a biological sense, they ARE the human race.

      Bees are generally black and yellow, and have poisonous stingers. Individual bees, however black or yellow they may be, and poisonous their stingers may be, are all 100% bees - they all possess an equal allotment of beeness. Likewise, the quality of humanity is 100% endowed to each of us.

      However, it does not arise from any of us individually. We are all human only because the entire human species exists. The genome of any individual person is NOT sufficient to specify the human race; the genetic diversity of your fellow human beings is part and parcel of YOUR fundamental human identity.

      The same is true, in fact, of the genetic diveristy of all known living things, who are our cousins.

      Many people have a viceral objection to the idea of a gene being owned. Certain of my colleagues are fond of implying that this arises from some degree of scientific ignorance on their part, or a lack of appreciation for the effort that goes into doing molecular biology. I am a molecular biologist myself, fully cognicant of the hard work that is done. I understand all of that quite well, but I come to the same viceral conclusion: you cannot that which makes us human.

      Also, the parent is really funny. Mod it up.
      • I excitedly read your piece, and then found you left out the single critical word that would have completed it. Is this genetically the equivalent of producing an ugly toad instead of a thing of beauty?
      • So, Intel has patented an arrangement of transistors and other components

        It is important to note that the physical layout falls under copyright law, not patent law, in most cases. The electrical arrangement however, can be patented. Thus with chip design, you are dealing with two IP laws.

        Imagine if gene sequences could be copyrighted, too.

        In a way, that could be good. :)

        'Your gene sequence includes a significant amount of my gene sequence, and is therefore a derived work. Under the GGPL (GNU Genetic Public License), you MUST give out the source!"

        Maybe not, though.
    • Are you joking or not? I sure hope so, because you're on crack if you believe any of what you just wrote. Biomedical research is being held up by gene patents - you'd know that if you'd ever read any of the many related articles that have been posted on Slashdot in the past, or if you were (like me) a molecular biologist. Read a college biochem textbook, it'll clear things up.

      Companies can always patent their final therapy, and there's very little that can be done to get around those patents outside of violating the patent outright. Gene patents, on the other hand, simply block other groups from doing research. This includes research done with your tax dollars, that isn't getting done because some biotech patented genes it can't even use.

      Finally, just as much real innovation goes on in academia (biotechs end up getting commercial rights- the arrangement has its problems but is generally good for the public). We should eliminate gene patents, and double the NIH budget. (Getting university administrators to stop skimming off the top of research grants would be good too- I'm sure someone else here knows what I'm talking about.)
  • a system familiar to GNU/GPL for DNA-mapping. Think of the advantages...
    • Important information of genes/genetics are put to good use by being shared with geneologists around the world.
    • More time can be spent on producing cures for critical deseases instead of patenting genes that you found.
    • What if someone found a cure for genetically-linked desease, but can't make the formulae public, because the genes that need to be altered is patented to some other guy?
    Personally I think that scientists should put the needs of mankind first before succumbing to the influence of the almighty buck.
    • There's really no need for a gene-GPL. Prior art is fantastically easy to establish. All an academic institution has to do is publish a paper in a journal (even a crappy journal....it doesn't have to be Cell to prove that you found it first) about the gene.

      Second of all, I take issue with your issue that all scientists should put the needs of mankind first. Most postdocs make $30-40k/year and work 50-80 hours a week. Think about that. We're talking about 4 years of undergraduate work, followed by at least 5 years of graduate work just to get to the aforementioned position. Can you blame some people for putting their own needs before the needs of mankind? Personally, I've chosen not to go into industry. But I'm not about to demonize everyone that does simply because they want a more comfortable and less stressful lifestyle.
  • by crc32 ( 133399 ) <{moc.23crc} {ta} {niloc}> on Tuesday June 18, 2002 @10:23PM (#3726518) Homepage
    Where gene patents are still most relevant is where they are most needed, over sequences not occuring in nature. If I design a gene, and then you use these techniques to circumvent my patent, you still must have my patented gene in your system somewhere. But if the gene is naturally occuring, then a patent shouldn't have been granted in the first place (non-novel/obvious). So this merely makes gene patents fall more in line with traditional patents. Not bad, but not totally destructive of the system either.
    • Where gene patents are still most relevant is where they are most needed, over sequences not occuring in nature ... But if the gene is naturally occuring, then a patent shouldn't have been granted in the first place (non-novel/obvious).

      That's interesting... what if I design a gene that no one has ever discovered before, so I get the patent, and start using it in a product. However, suppose that later this same gene appeared due to a mutation. The mutation is a natural process. Would another company be able to steal my design now?

      I just don't think you can separate designed genes from naturally occurring ones, because any gene could occur in nature, given enough time. You also can't prove that the gene doesn't already exist in nature, and we just haven't found it.
  • Proof the IP is dead (Score:4, Interesting)

    by pootypeople ( 212497 ) on Tuesday June 18, 2002 @10:31PM (#3726552)
    As the Internet community has tried to tell people for years, our current ideas of Intellectual Property are dead. Copyright, patents and other monopolizing influences on pure information have no reason to exist and the Internet has finally given us the means to destroy these useless ideas. I'm not against credit for one's work; the GPL and other such licenses can protect that if people are responsible in their use of open-sourced information. The difference is that in the Information Age, if you're going to come up with ideas for the good of society, you'll have to do it solely for that reason. Is that so wrong? Would it be wrong to teach people that to do the right thing and do things that are positive for society is it's own reward in the recognition one receives? Must we promise lordly lifestyles to those who create good things? Not really. Imagine this; a world where people develop cancer medications that can be distributed at low cost because they want to cure cancer, not because they want to make money. A world where scientists work together to solve problems, instead of working separately to make money. Let's think about that. The only problem is corporations (who give us more reasons not to trust them every day) want to protect the old system, because it grants them power. The thing they don't realize is that they've already lost. The old world is dying a slow and painful death; let's do the responsible thing and euthanize it.
  • by guttentag ( 313541 ) on Tuesday June 18, 2002 @10:34PM (#3726568) Journal
    can one patent a technique for making other patents irrelevant?
    • Nor can you patent a technique for appying for a parent that isn't on the books or in the process of being put on the books.
  • amgen vs. tkt (Score:2, Interesting)

    by pmineiro ( 556272 )
    i would like to explain the case "amgen vs. tkt" which is alluded to in the article.

    basically, amgen has composition of matters patent on epo, both the sequence (which causes it's production in bacteria) and the protein (which is the stuff actually injected into the patient).

    tkt caused cells to produce epo w/o using the epo sequence to coerce bacteria into producing it -- instead they coerced cells into producing it, without ever introducing the epo sequence into those cells. they then harvested the epo protein and (wanted to) sell it for serious $$$.

    the court found that tkt did not violate amgen's sequence patent but did violate amgen's patent on the protein. hence, tkt did not have a product.

    now, if tkt or anybody else came up with a compound which increases the endogenous production of epo, it's widely believed that neither the sequence patent or the protein patent would be infringed.

    the difference is that such an "endogenous upregulator" would never require collecting and administering the protein (which has a composition of matter patent associated with it).

    but this is no big deal. it's been known for some time. my company focuses on drugs that regulate gene expression. nonetheless, nobody has ever found such a magic epo upregulator, and with $2b in sales, you can bet people are trying.

    • ...and the protein (which is the stuff actually injected into the patient).

      tkt caused cells to produce epo w/o using the epo sequence to coerce bacteria into producing it -- instead they coerced cells into producing it, without ever introducing the epo sequence into those cells. they then harvested the epo protein and (wanted to) sell it for serious $$$.

      I'm not being argumentative, but, how can Amgen patent a protein that has been "made" by "Nature" (vis-a-vis gene splicing, molecular engineering, etc./whatever by humans). I understand that tkt coerced the bacteria; however, I don't think that should disqualify tkt's protein. What if Amgen patented Protein X and tkt, instead of coercing bacteria to make PX, found an previously-unknown spieces of bacteria that produced Protein X? I tried to use an example that wasn't too contrived; I'm assuming a finite set of proteins (based on current tech and what bateria can produce) and that administrating the protein is no more complicated that a needle prick. Granted, IANAL, (I assume) YANAL, etc.

      -MKD

    • Actually, in such a case, Amgen would be forced to sue the individual patients for allowing their cells to violate Amgens patents. In fact, they should probably sue everyone else whose body produces the infringing proteins and ask law enforcement agencies to forcibly stop this violation.
  • Oh my God (Score:5, Insightful)

    by mcc ( 14761 ) <amcclure@purdue.edu> on Tuesday June 18, 2002 @10:42PM (#3726609) Homepage
    OK.. when science is having to develop new methods which have absolutely no practical value other than to dodge patent laws, you know the patent law is completely unjust. Patent as a concept is granted to promote science and facilitate its advancement. When science is instead treating the law as an obstacle and exerting effort on finding ways to go around it-- that is to say, when for task A which has been patented it is easier to find a way to circumvent the patent law than it is to design an alternate, non-patent-covered version of task A-- then that patent law is not serving its purpose, is being a detriment to science, and is probably unconstitutional.

    One of the neatest features of patent law is that it encourages lots of experimentation; if you need to do something, and there is a patented way to do this thing, and you can't afford to license the patent or the patent owner refuses to license it, this isn't that much of a problem; you just find an alternate way to do the thing, enlightened by your knowledge of how the current patent holders do it, and then patent your version. Today's overly broad patents prevent this; rather than creating cycles where technologies in a given industry iteratively improve as each company innovates new things and patents them (and the other companies look at the public details of the patent filing and try to find better ways of doing the same innovation) today's patents create dead ends; places where technology may no longer advance except with the permission of a certain company.

    Because the main problem with the unjust patents of today-- software patents, business model patents, gene patents-- is that they cover a goal, not a methodology. Indeed, these patents are not just overly broad, they miss the point entirely; they cover concepts, while patent law was only ever intended to cover implementations of concepts.

    Just a thought.
    • Re:Oh my God (Score:4, Insightful)

      by vldmr_krn ( 737 ) on Tuesday June 18, 2002 @11:36PM (#3726839) Journal

      OK.. when science is having to develop new methods which have absolutely no practical value other than to dodge patent laws, you know the patent law is completely unjust.

      Patent laws gave birth to the corporate research lab. Let's have some perspective here, shall we?

      • Patent laws gave birth to the corporate research lab. Let's have some perspective here, shall we?

        Seems reasonable enough to me. All things in moderation and all that. Just because the idea of patents happens to be a pretty good one, doesn't mean that the system hasn't been perverted and abused to the detriment of scientific progress.

      • The portion you quoted was not meant to advocate throwing out patent law. It was meant to advocate changing the unjust portion of patent law. I originally meant for the words "the patent law" to refer to the single law which was inspiring people to circumvent it technologically (for example, the law allowing patenting of genes). It was not meant to refer to all patent laws as a singular entity ("the law"). I see now, however, that that sentence was written in an unclear manner. Sorry. My bad.

        There are lots of patent laws. Some of them are unjust. Some of them are beneficial. Some of them are both, and some of these could be rewritten to become just without removing their public benefit.

        I don't see how you're making any kind of point here. Just because something has caused at least one good thing to happen as a side-effect doesn't mean it is overall a good thing, and it CERTAINLY doesn't mean that there is no room for improvement.
      • Let's keep this in perspective dear Vlad.
        You see, corporate research labs are exactly that: corporate research. Their primary concern is how to make money. The vast majority of basic research is done by . . . hmm let's see oh yeah that's right universities. And at the universities who does the actual footwork? Yes, it's true the lions share of research in every scientific field including biotech and computers is done by graduate students who work for . . . grades, ie mere recognition. Hmm. What is this? Communism?
    • don't be so sure that there won't ever be other uses for the technology... in a sense, precisely because of these patents a new technique has been developed. sometimes short-term development may be slowed by "unnecessary" work, but the bet is that in the long term, having different groups competing to find alternative solutions will better benefit society.

      not that I don't agree with you that things are out of control, but I don't think this is a great argument for that. this development provides better ammunition for supporters of the current system, imo...

      I do like your last paragraph and agree wholeheartedly. (the one before "Just a thought," though I guess I can't disagree with that one either...)
  • by splorf ( 569185 ) on Tuesday June 18, 2002 @10:49PM (#3726641)
    What about the Canadian case where farmer Percy Schmeiser [percyschmeiser.com] was convicted of patent infringement because genetically modified canola seeds had blown onto his fields and grown there?

    It's under appeal, but doesn't look good. The GM Canola apparently spreads like a weed and is growing everywhere. And once it hits your property, Monsanto claims the right to rip up your crop if you don't pay them for a patent license. The best general overview I've seen is the 169k pdf file linked from here [percyschmeiser.com].

    If the Scientific American article is correct, it looks like US patent law is (for once) less screwed up than at least part of the rest of the world's.

    • This case is a big deal here in Saskatoon. Your facts are incorrect: it was shown that the seeds could not have blown off a truck. An engineer here at the U of S showed, in court, that the seeds could not have been distributed in such a way.
      • For the rest of us in Canada, I think we've generally accepted the farmer's story that the seed blew onto his property because that's the last we heard of the story. Anyways, disregarding what specifically happened in this case, what would the Canadian law say if GM seed accidentally blew onto your field and grew, without your knowledge and without your intent?
        • That's a hypothetical situation. We can't base legal precedent on hypothetical situations.

          Sort of like a huge discussion 'what if Linus Torvalds were hired by Microsoft?'

          It gives pundits all sorts of hand waving opportunities to make their point and rant their rants, but it's not productive for a real discussion.
          • It's pretty obvious that discussing stupid hypothetical scenerios is a waste of time, however you seem to want to throw ALL hypothetical situations in the same boat.

            Here's some basic criteria for determining whether a scenerio is worth discussing. (If you answer yes, it's worth discussing)

            1. Is the scenerio likely?
            2. Can the scenerio be used to circumvent the law either ligitimately or illigitmately?

            Imagine what would have happened to the PC industry if they hadn't discussed the hypothetical situation in which they could circumvent the copyprotection of the IBM PC's BIOS, thus ushering the PC clone revolution.

            This is no different...
        • Or better yet, what if somone who wantes to ruin your farm comes in the dead of night and plants a few of these seeds in your field?
  • No doubt this violates the DMCA. Keep dreaming, these loopholes will either be patched, or the fascist DMCA will be repealed.
  • I don't see how it is better for ANYONE except big business when gene sequences are patented. Aren't these things supposed to help the human race by fighting disease and such?? I see patenting this stuff as hindrance to EVERYONE except those who are going to make money. The only relevant point the law makers should be looking at is that the human race is better off not patenting living matter. Right?
  • by Dr_Marvin_Monroe ( 550052 ) on Tuesday June 18, 2002 @11:00PM (#3726696)
    ....And I've got the "prior art" to proove it! I was using these genes for years before anyone knew what they did. And I've sold myself for money too, as much as I could...

    There is simply no legitimate reason why anyone should be granted a patent on a gene....perhaps they COULD get a patent on a particular piece of equipment, for the purpose of making a particular set of proteins. That's a legit patent, you know,
    "equipment/process for doing something novel" and "for the advancement of the usfull arts" kinda stuff...either way, it's NOT for something that's either an idea or just simply a fact of nature.

    Yeah, I've heard the drug companies arguments too..."we spent sooooo much money finding out what this gene does...", blah..blah...blah...it's still bullshit unless you found some cool way of making "special protein sequence #27(tm)." You cannot get a patent for simply proving it's existance and/function in nature. That's the patent rule..

    I say these other "bio-pirate" companies should absolutely PLUNDER these stupid "patent holders"...

    ...You can't own the ideas in this conceptual land rush, you just gotta fill you brain up fast as you can and stay on your feet....

    ..
  • If I genetically engineer (or even just train) birds to sing copyrighted songs, can I avoid paying a royalty to the copyright holder?
  • by Starcub ( 527362 )
    Isn't this just the reverse engineering of a natural process? Isn't this how discoveries are made that tell researchers what DNA modifications need to be made to trigger a gene or genes to produce some natural byproduct? It seems to me that these companies may essentially be patenting natural discoveries, not novel inventions. Also, if the proteins produced are indeed natural, how can they be patented? Therefore, I don't understand how someone could patent both the process (modified gene), and the product. I'm assuming here that by this statement:
    "...companies patent not only a gene but the protein made by the gene."
    that they mean the modified gene since patenting unmodified genes seems ridiculous to me. Am I missing something here?
  • by rice_burners_suck ( 243660 ) on Tuesday June 18, 2002 @11:19PM (#3726775)

    Patents are stupid!!! Copyright sucks!!! Trademarks are crap!!! Ban intellectual property!!! Screw the establishment!!!

    <fine print>
    Patent pending. Copyright (c) 2002, rice_burners_suck. All rights reserved. "Patents are stupid!!! Copyright sucks!!! Trademarks are crap!!! Ban intellectual property!!! Screw the establishment!!!" is a registered trademark of rice_burners_suck. All other trademarks are the property of their respective owners. This flamebait is protected by U.S. copyright law and international treaty. Do not make illegal copies of this flamebait. All violations are punishable by death per subparagraph 3,939,112 of DMCA XP 2004.
    </fine print>
  • So the patent system encourages innovation after all! These guys have come up with an innovation that makes certain patents irrelevant!

    Now if only someone could do the same for software patents, and release it under the GPL.
  • by Anonymous Coward
    The people at Levi Strauss must be really pissed that somebody found a way around their gene patents...
    oh wait....

  • 'Bout time God did something about all of this patent nonsense. I was getting worried.
  • by rnturn ( 11092 ) on Tuesday June 18, 2002 @11:59PM (#3726932)
    ``...patent law cannot be enforced in instances where an existing cell or organism is caused to express any of these patented genes and proteins.''

    Are they kidding? If it's alive a really good lawyer will find a way to sue it. Heh, heh.

  • This reminds me of a particular theory/joke that if a infinite number of monkeys typed for an infinite amount of time... they could come up with the complete soruce code for MS windows. Well this process that they are describing.
    "Inserting pieces of DNA into cells to turn on genes randomly and then screen for the protein of interest"

    Is basically analogous to having a copy of the source code and each time a monkey spits out a page, we look at it and see if it's a match to the page we are holding.


    Then the conclusion is drawn that if we can get it by some other way than actually copying it from the original, then we can use it.


    Another example of this technique is that lets say I have the complete specs for an algorithim for an encryption technique, lets call it CSS. And I decide to not copy it, but derive my own program from this knowledge that I have of the specs.... is that new program legal? Ask the courts... I still think that Jon kid is still in deep water for it.


    steve

    • Actually that's a darn good idea. You don't want to copy software because that's illegal, isn't it? So you generate a random byte. Check it against the first byte of the code that you're not copying. If it's not the same then you try again. If it is the same then you say "Oh what a coincidence" and move on to the next byte.

      When you've completed your randomly generated sequence of bytes, you have an exact copy of the original, but you haven't copied it, have you?

      Would this stand a hope in hell of standing up in court?

      Regards, Ralph.
  • what a joke (Score:5, Insightful)

    by dh003i ( 203189 ) <dh003i@gmail. c o m> on Wednesday June 19, 2002 @12:18AM (#3726986) Homepage Journal
    The idea that you can infringe on a patent by purifying a protein is ludacrous.

    All purification techniques are basically the same. There are basically say about 20 ways to purify a protein (i.e., by size when folded, size when denatured, charge, substrate binding, shape, pH, hydrophobicity, genetically fusing the protein to a tag such as GST and using affinity for that tag to purify, etc). Any procedure used to purify a protein not-before-purified is simply the right implementation of these processes. This is something which takes a while (usually about a year, reserved for grad. students) to get right, because you basically have to have an assay for your protein activity and find a way to purify the protein via these methods by trial and error; you can tell how pure the protein is by measuring activity levels.

    In other words, there is NO NEW technique that anyone invents now-a-days when purifying a protein. People figure out new applications and combinations of old techniques, or new specific implementations. However, these are NOT new techniques themselves (i.e., often times, the new implementation may be running the purification at pH 6 rather than pH 7). They are certainly not worthy of patents.

    Of course, the greed of biotech companies and the gneral plundering of science knows no limit in the corporate world. They aren't real scientists. Like there are basketball players who play for the love of the game (i.e., Michael Jordan, Magic Johnson, Larry Bird), and then there's the guys who play and its all about themselves and making money (i.e., Allen Iverson and Latrell Sprewell). Same thing with biology. There are real scientists who do what they do for the love of science (i.e., Watson and Crick, Rosalin Franklin), and then there's scientists who are all about their own ego and making money (i.e., Creig Ventor).

    Had scientists realized that their discoveries would be used as the basis for patents restricting the progress of science, they would have thought up the idea of patent-left, and forced anything based off their ideas to remain free for all to use.

    When Linus Pauling pioneered the first protein techniques, he assumed that any modifications to his techniques would be made freely available for all; that was the culture of science. When Rosalin Franklin, Watson, and Crick discovered the structure of DNA, they assumed that the knowledge and benefits gained resulting from the knowledge of that structure would be made freely available to all; that was the culture of science. In most scientists minds today, that is still the assumption. Unfortunately, due to proprietary parasites on the scientific community, that assumption is invalid. These proprietary parasites are not members of the scientific community -- they are parasites on it. They add nothing or very little, and hurt the community at large. They are much like the corporate raiders of the net today, who have become a plague to *our* internet.

    The scientific community needs to wake up and disinfect itself of these parasites. The scientific community should start copylefting publications and patent-lefting inventions.
    • The only entity who gives scientists salaries and laboratories with nice equipment and underlinks and doesn't expect them to produce patentable discoveries is the United States government. And the reason for that is that the government expects them to produce classifiable trade secrets (usually military technology secrets). A few wealthy idealists (patrons of the arts?) may still sponsor work for the "good of mankind", though most ventures are for profit of some sort or another. As far as I can tell, it has always been that way. Perhaps the scientists themselves are idealists, but the money and power are not burdened by such political beliefs.

      • Oops. It isn't just the U.S. government, it is any government that sponsors closed research.

      • Re:what a joke (Score:4, Interesting)

        by the gnat ( 153162 ) on Wednesday June 19, 2002 @07:59AM (#3728103)
        Wrong. The DOE paid for a large chunk of the Human Genome Project, and the NIH paid even more. Assorted federal agencies give money to most biomedical researchers in the US, and we're not expected to do anything classified. It truly is given to advance the cause of science. Although, yes, we don't get the kind of serious money that makes for really nice labs- but the crystallographers down the hall from me did manage to afford an Apple Cinema display. Some wannabe-free-market-conservatives would say that the NIH is a perfect example of government waste, but it's why the US, despite our educational problems, is a scientific giant and attracts people from all over the world. Even colleagues who regularly mock US culture and our "odd" priorities admit that government support of research is nearly unparalleled.

        As for the wealthy idealists, there are lots of those, and some have a shitload of money. The Howard Hughes Medical Institute and Keck Foundation are two of the most prominent. The HHMI gives out so much money that professors under its wing are officially both "Professor of and HHMI Principal Investigator". Good stuff.
    • IMHO, the majority of scientists are driven by ego, not by "love of science". There's a whole culture of scientific hero-worship: it serves a purpose, to push scientists to strive for eternal fame. You can make a great show of humility and claim to want to help humanity, but that won't keep you slaving in a lab for 10 years. The real motivation is the dream of having your name enounced worshipfully centuries from now.

      I don't disagree with your main points, but I think we shouldn't kid ourselves about the true motivations of respected scientists. They follow the altruistic conventions of the scientific community because they know it will afford them respect and goodwill. A lot of our top scientists are really egomaniacs like Wolfram at heart.

  • you can't patent something as it is found in nature

    Always had an issue with that statement.

    Well, Gee, Aren't we all found in nature? Are humans natural? Is what nature does natural? Then isn't it reasonable to assume that anything humans do is also natural?

    Even if some gene just happened into existence because humans engineered it (cleaned it up, etc.,) then its existence in nature is achieved by natural means, ie: humans.

    Most recent intellectual patents are really dumb anyway.

    • "natural" seems to be defined as however people want it to be defined in order to best suit their cause.

      Go to a natural foods store... $10 says you'll find Tofu. Is Tofu any more natural than a hotdog? I don't think so.. they're both processed foods.

      So when they say natural they really mean "whatever I want it to mean".
  • The knee-jerk reaction against gene patents is unwarranted, and propogated almost entirely by non-biologists.

    Gene patents will be justifiably enforceable when gene products (ie. proteins) or closely-related elements are used as therapeutics. If I clone a tumor suppressor gene and use that gene to make a protein which kills tumors when intravenously injected, I deserve patent protection.

    If I make a product which exploits the gene sequence, such as antisense RNA, I also deserve patent protection.

    If I express the protein, generate an antibody against that protein, and introduce it as a product, I also deserve patent protection.

    Those who reflexively assert that "These are my goldarn genes, yoo kant patent me yoo nazi!" need to do some more reading.
    • You deserve? You _deserve_? Well, there are some people who maybe _deserved_ to live. They dont, however, because neither they nor their governments could afford the medicines due to the patents.

      You _deserve_ nothing. Patents are a fiction that's been made up to promote the development of science for the benefit of society. The benefit to society is the basic justification of patents, and that benefit is by now very doubtful. Perhaps society would be better served by removing patent protection entirely and funding development in alternative ways. The inability of the medical industry to handle the ethical burdens of the issues may eventually make that necessary.

      In practice I agree that specific methods should be patentable. Your specific method to clone a tumor suppressor gene should be patentable but anyone should likewise be able to devise other, cheaper, methods to clone the same gene. This is how traditional patents have worked. You can patent the specific method to do something, which is far less damaging than being able to patent what amounts to the actual goal. And only, _only_, if these are non-obvious methods to a person with experience in the field. That is, if you're racing against someone else to develop a specific method first, forget it. It's _obviously_ not inventive and 'deserving' of patent protection, or there wouldnt _be_ a race.
  • Gene patenting will ultimately destroy corporate biotechnology. The ultimate goal of any corporation is easy to define. It's to create a product that everyone has to buy over and over again. So far, fortunately, no corporation has been able to achieve this goal. With gene patents, however, the goal becomes possible.

    The scenario is (hopefully still many years away, but) this: Company M gets a patent for a gene to confer immunity to some virus V. Company M then release grain strain G that resists all kinds of herbicidal drugs, but also has a high susceptibility to virus V. G gets out into the wild (accidentally, ha ha), and because of superior engineering, spreads and dominates grain fields throughout the world. Suddenly, through a "random change" in the biosphere, humans all over the world are exposed to virus V. The only known cure involves the gene patented by company M. So everyone has to buy their tablets from company M every week. Of course, the tablets are priced to cost 75% of the average American's salary -- after all, what is your life worth (and who cares about people in other countries, anyway -- they have no money)?

    The only reasonable response from any government is to invalidate the patent, and send all the corporate executives to prison where they will earn the nickname "Flexible Betty". Meanwhile, billions of people die because company M is legally bound to maximize profits to their stockholders, and it's just not fiscally responsible to give the drugs out for free. Ultimately, governments everywhere realize that allowing patents on genetic material is a bad idea. So eventually the system regulates itself, but in the meantime a large number of people die so that a minority can increase the value of their portfolios. Makes me think that stockholders should, as owners, be held legally responsible for the behavior of the companies they own, but that's another post in itself.
  • "That's a great synthetic pet! Let's make ourselves a copy!"

    "Wait, it's patented."

    "Enh, we'll just reverse-engineer it from the neighbors."

    Gene-swapping is BORN!
  • Typically the genes that receive patents are new formulations of existing genes. They are not,nor will they ever be naturally occurring. They have been modified to increase expression, reduce redundancy, and have excised non-important segments for the final product. These have similarities to natural genes, but are usually chimeras of several genes or gene segments.
  • I've never thought of genes as a patentable thing. Sure, they allow patents, but WHY? They didn't invent it, they DISCOVERED it, and last I checked you couldn't patent a discovery such as a law of nature.

    Hmm. That's it, I'm patenting the Laws of Thermodynamics. Now you have to continue attempting to make a perpetual motion machine, because if you use my laws to find out that it's impossible, you have to pay me royalties! Ha!

    Bleh. Patenting something created in nature is... ugh. Let's patent the leaf next!

He has not acquired a fortune; the fortune has acquired him. -- Bion

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