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Biotech Medicine News Science Technology

In Search Of A Healthy Gut, One Man Turned To An Extreme DIY Fecal Transplant (theverge.com) 136

Josiah Zayner writes: Arielle Duhaime-Ross at The Verge followed Dr. Josiah Zayner, a former Scientist at NASA turned BioHacker, as he attempted the first ever full-body microbiome transplant. She writes "Over the course of the next four days, Zayner would attempt to eradicate the trillions of microbes that lived on and inside his body -- organisms that helped him digest food, produce vitamins and enzymes, and protected his body from other, more dangerous bacteria. Ruthlessly and methodically, he would try to render himself into a biological blank slate. Then, he would inoculate himself with a friend's microbes -- a procedure he refers to as a 'microbiome transplant.'".
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In Search Of A Healthy Gut, One Man Turned To An Extreme DIY Fecal Transplant

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  • by Anonymous Coward

    There are other ways to adjust the bacteria present, such as through diet. Furthermore, eliminating bacteria that ward off other, harmful, microbes seems dangerous. Why would you do this? I suspect this can be filed alongside things like very low calorie intake diets as a way to do some really serious harm to your body.

    • Re: (Score:1, Insightful)

      by Anonymous Coward

      > There are other ways to adjust the bacteria present, such as through diet

      Probably not in the way he is attempting. It's almost like you don't understand what he's doing and suggesting an alternative course that is ineffectual out of obvious ignorance.

    • Also, how is this really that different from probiotics? Just dose yourself with antibiotics to wipe out intestinal microbes and take any of the number of probiotics that supposedly contain the healthy or beneficial bacteria that your body needs.
      • Re:Um, why? (Score:5, Informative)

        by Josiah Zayner ( 3044297 ) on Wednesday May 04, 2016 @06:49PM (#52049689)
        Totally different, probiotics usually have assorted bacteria that are usually not associated with a healthy or unhealthy gut. Microbiomes, like those of the gut function as communities meaning you can't just add one or two species and hope everything is better(at least not from what we know at the moment). Using a fresh poop sample increases the chances that not only will a transplant take but also that the beneficial microbes will be there in the appropriate amounts to be beneficial.
      • by sjames ( 1099 )

        The probiotics can help people but they are far from complete. We don't even know the full composition of the gut microbiome.

        I'm not sure why he pushed it as far as he did, but the procedure he did on his gut is gaining acceptance in spite of the FDA rushing in to put the brakes on progress.

        • If probiotics really contained bacteria that could survive in our gut and make us healthier, we would just need to take one single dose and the company would not make any money on them.

          So instead, I suspect they contain bacteria that may provide some short term benificial effects, but are not really suited for our gut and disappear shortly afterwards. That way, you need to take them repeatedly and keep spending money on them.

          So if you want a healthy gut, probiotics are not the answer.

      • Re: (Score:1, Informative)

        by Anonymous Coward

        Probiotics are typically a supplement, trying to boost established levels of a couple of specific strains. Wiping out his microbiome and replacing it with a couple of strains probably wouldn't be the best idea... He's trying to replace his microbiome with all the strains present from a healthy one.

        While I can see this working I wonder how important the balance between each strain would be to replicate the healthy microbiome. After all, there is no guarantee on the numbers each strain will establish themselv

      • Re:Um, why? (Score:4, Insightful)

        by FrankSchwab ( 675585 ) on Wednesday May 04, 2016 @10:28PM (#52050435) Journal

        Probiotics contain nothing that resembles fecal bacteria. If they did, they'd be immediately removed from the shelves.

        Probiotics are mostly a way to seperate people from their money.

        • Depends on the priobiotic. But just because there are common strains of bacteria as that in the gut doesn't mean they would be pulled from the market. There is nothing wrong with consuming bacteria, we do it all the time. The problem is with specific species in specific quantities. Now the FDA isn't going to allow a probiotic on the market that contains salmonella, but lactobacillus they wouldn't care about nor should they, it's common in your gut and common in food you eat. There are several varieties of p

          • There is actually research being done on this right now to find out if poop transplants can make people healthier.

            It's entirely possible that these gut microbiomes affect far more than we realize.

            Your gut flora adjusts to your diet—To them, it is the type of Manna that falls from heaven.

            Fatties and gluttons who have diets that lead to morbid obesity have been on a consistent diet of CRAP for years. This is why 'crash diets' don't work.

            One needs to slowly ramp their diet to a healthy one, while simultaneously dosing daily with a 'full-mix' macrobiotic. In the end, the 'good bacteria' win out over the others. It is a process – NOT an overnight transformation!

            Oh, it also helps if you sel

            • by Anonymous Coward

              And yet there are documented cases where fecal transplants after microbiome-destroying procedures have radically changed someone's weight, despite no change in diet or exercise.

              We are shockingly ignorant of how the body's metabolism actually works, largely due to people like you dismissing everything as a matter of diet and exercise.

              • And yet there are documented cases where fecal transplants after microbiome-destroying procedures have radically changed someone's weight, despite no change in diet or exercise.

                I hope the documented cases you refer to aren't 'Scheisse porn' videos. :-P

                Anyway, agreed, we know very little. Humans are superorganisms. Most of the cells in our bodies are NOT our own. IIRC, a human body has about 10 trillion cells. 90% of those cells do not contain our DNA — They are symbiotes.

                Going back even further, it is generally hypothesized that organelles in our own cells arose from this symbiosis. But, over eons, in mono-cellular organisms, some of these symbiotes lost their ability t

            • To all who have replied: You are in agreement with me, but failed at reading comprehension:

              Sir Holo said:"... while simultaneously dosing daily with a 'full-mix' macrobiotic."

              Perhaps I should have written 'full-spectrum' instead?

              I was pointing out that our gut flora are a significant factor in our guts' response to, digestion of, and uptake of calories, vitamins, minerals, etc.

          • Depends on the priobiotic.

            It really doesn't. There's a reason that bacterial transplants are done surgically or anally. Just how much of that not so tasty hyper expensive milk do you think will survive through your stomach acid? It's like those people who ph balance their diet so their blood acidity is healthy without realising they are feeding a self regulating system through a means that doesn't touch the said system.

            The number of bacteria which survive down to the gut through ingestion is not at all significant, and any that can'

            • And yet probiotic yoghurt drinks appear to have a notable effect in reducing reflux after oral antibiotics. They've saved me on several occasions.
              • So does homeopathy and sugar pills.

              • What were you eating instead, before you started eating probiotic yoghurt? One possible control for this experiment would be to sterilize the yogurt and see if it still helps.

                • The advice was to have a small probiotic drink 15 minutes or so before a meal. Another poster points out that heartburn is about the upper GI tract, not the lower, so not valid.
              • There are some problematic bacteria that live in the stomach, and they can cause problems if they are not kept in check by competition from "nicer" neighbors.

                The bacteria that live in the lower GI tract are entirely different species. Pretty much nothing that lives in the extremely acidic environment of the stomach can thrive in the neutral environment of the intestines.

                Consuming samples of bacteria that should grow in the throat or stomach is fine, and it may help. At the very least, it is not completely a

          • At the moment there don’t seem to be many biome treatments, but the recent availability of inexpensive bacterial profiling makes me hope to see some in the next decade. The British Gut Project will profile your microbiome for £75 (see http://britishgut.org./ [britishgut.org.] Fecal transplants into animals have shown persistent changes to (for example) the tendency to obesity. There’s a chance Zayner will keep his improved gut health. I know that people with psoriasis show changes to the skin and gut biome
    • Re:Um, why? (Score:5, Interesting)

      by ShanghaiBill ( 739463 ) on Wednesday May 04, 2016 @07:31PM (#52049839)

      There are other ways to adjust the bacteria present, such as through diet.

      That worked for me. A few years ago I bought a $39 yogurt maker from Amazon, and started eating a bowl fresh from the incubator every morning. As my gut bacteria changed, so did my appetite. I no longer craved sugar or other carbs, and started eating more fiber and veggies. I guess the little critters were using some sort of chemical feedback to make me eat a diet more to their liking. I am about 5 pounds lighter, have more energy, and have had no gut problems (diarrhea, constipation, or pain) in years.

      • As my gut bacteria changed, so did my appetite. I no longer craved sugar or other carbs, and started eating more fiber and veggies. I guess the little critters were using some sort of chemical feedback to make me eat a diet more to their liking. I am about 5 pounds lighter, have more energy, and have had no gut problems (diarrhea, constipation, or pain) in years.

        Please tell us all, in excruciating detail, about the characteristics of you diarrhea, and how they changed over this process of yogurt-conversion.

        You have our rapt attention.

      • What was your breakfast before you started eating yoghurt?

        If it included bread or other carbs then that might have something to do with this:
        "I no longer craved sugar or other carbs, and started eating more fiber and veggies"

        Also regarding that sentence, are you sure it wasn't the other way around? I'm not saying it is impossible that 'the little critters were using some sort of chemical feedback', but misattribution and jumping to conclusions are common things in diet-related matters (diet-hacks are an alm

    • Contrary to what the FA suggests, some experiments with fecal transplants to treat various other conditions have been done. Although most available data is anecdotal, there is evidence that they could be the best treatment for obesity, and a possible cure for type 1 diabetes and other auto immune conditions. See, for instance, some views of Dr. Jeffrey Gordon [judytsafrirmd.com]
      • Imagine the backlash when all the obese people band together because their doctors told them to eat shit.
    • Re:Um, why? (Score:4, Informative)

      by skids ( 119237 ) on Thursday May 05, 2016 @10:35AM (#52052837) Homepage

      RTFA. He had tried diet alteration already. Though granted, probably not thoroughly given his somewhat casual proclivities. Not that I can blame him: chronic intestinal distress eats away at your willpower and mental acuity quite severely over time. It's very hard to stay rational with a constant worm in your stomach. I can totally sympathize with the level of desperation that drove him to this. So, if doctor's don't want us nearly-schizophrenic IBS-ravaged patients turning to crazy DYI procedures, getting this area of medicine more science and evidence should be a priority, rather than giving us diazepam-laced anti-cholergenic cocktails, probably an antidepressant, and telling us to "avoid stress" (hah!), essentially treating it as a purely neurological problem.

  • by 0xdeaddead ( 797696 ) on Wednesday May 04, 2016 @06:25PM (#52049551) Homepage Journal

    there, a poop joke

  • NASA or not, you are a shiteater for life /enjoy

    • NASA or not, you are a shiteater for life /enjoy

      Well, faeces is just a later stage in the natural development of food; any meal is, in a sense, pre-shit, a term that sometimes seems strangely appropriate.

  • by roman_mir ( 125474 ) on Wednesday May 04, 2016 @06:38PM (#52049639) Homepage Journal

    So unlike everybody who commented before me here (just ACs so far), I actually read what was written and apparently the experiment worked.

    I've been running an experiment of my own for 21 years now. For the first 8 years only ate raw veggies, fruits, nuts, seeds. For the last 13 years eating cooked food, only veggies, fruits, nuts, seeds but also cheeses, yoghurt and some breads.

    I think people should be free to experiment with their own bodies, we only live once. Some people climb rocks, others eat shit, who knows, maybe something will come out of it. I personally would like to go through the DNA procedure to increase the length of the telomeres like that lady in South America did, I don't want to wait for any government approval for any of it, it's my life.

    • by Anonymous Coward

      I don't want to wait for any government approval for any of it, it's my life.

      That's fine, as long as neither government nor society in general are expected to cover the risk of that experiment going wrong. And that means if you ruin yourself and require $500K in medical expenses, that somehow healthcare prices are insulated from that event.

      • by sjames ( 1099 )

        Does that also apply to contact sports? How about skydiving?

        Does it apply to driving?

        Meanwhile, in this case, he may have saved healthcare a lot of money.

        • Driving is a funny example. It's precisely the reason we have seatbelt laws. Sure, you can skip them, but you'll get fined -- generally a large enough fine to convince people who would otherwise roll the dice on not wearing a seatbelt to do so. So, we legislate lower shared medical (and municipal fire/police/ambulance) costs.

          • by sjames ( 1099 )

            Sure, we mandate mitigation but car accidents are still a common reason for unpayable medical bills.

          • by DRJlaw ( 946416 )

            Driving is a funny example. It's precisely the reason we have seatbelt laws.

            Well, unless you can point to a law requiring so much as a fine for feedling yourself poop, you've pretty much demonstrated why the legal conversation concerning this event should be over.

    • Re: (Score:2, Troll)

      by Khyber ( 864651 )

      "I think people should be free to experiment with their own bodies, we only live once."

      I've died twice, maybe YOU only live once, mortal!

    • That's just eating weird. Science isn't done by only observing yourself. After all your opinion is going to be colored by desired outcomes, confirmation biases, yada yada yada. Valid medical trials are done with double-blind placebos.

      • Sure, but I am running an experiment on myself for my own sake, not for anybody else and I am not proposing that anybody follows me. My point is that we should be deciding what we are and what we do with ourselves, not any government or any other outside collective.

    • Yep. Evolutionary biology, and also active adaptations of existing gut flora. Both come into play here.

      Throughout our evolution into homo sapiens sapiens, our ancestors endured many varied and variously harsh environments. The result is that, today, we have a lot of "junk genes". LOL.

      Junk genes they are not. Just because they are not expressed does not mean that they enable some metabolic capacity or other during times of resource-stress that our progenitors endured. Should we endure something differe

      • That is, their primary caloric intake is ethanol -a simple sugar.

        Ethanol isn't a sugar, it's an alcohol. It winds up on the citric acid cycle via a slightly meandering path.

        • That is, their primary caloric intake is ethanol -a simple sugar.

          Ethanol isn't a sugar, it's an alcohol. It winds up on the citric acid cycle via a slightly meandering path.

          Is that because the second carbon lacks a carbonyl (C=O bond)?

          If it did, with formula then C2H4O2 – instead of EtOH (C2H6O) – what would it be called? A monosaccharide, yes, but what is the nomenclature for monosaccharides? Would it be called "ethanose"?

          I'm a solid-state physicist, so I never took a biochem course...

          • Is that because the second carbon lacks a carbonyl (C=O bond)?

            Ugh. Er, organic chemistry... it's been a while.

            ethanol is a simple alcohol, i.e. an alkane (a simple hydrocarcobon) with an -OH bolted on to the end. Monosaccarides have one -OH attacked to every carbon atom except the last which has a carbonyl.

            Going by that formula (i.e. a 2 carbon sugar) would look something like:

            OH-C - C =0

            (with of course all the other hydrogens omitted). Apparently it goes by the name 2-hydroxy acetyl aldehyde, diose (sugar

    • and when your uninformed, medically unsound experimentation kills you, your family will go around suing everyone they can, blaming everyone but you. Hence we have laws preventing unsafe behavior (in some instances).
      • Hold on, hold on, let me write this down, who do they sue once the food I choose to eat kills me?

    • I personally would like to go through the DNA procedure to increase the length of the telomeres like that lady in South America did...

      This lady? https://www.technologyreview.c... [technologyreview.com]

  • by Anonymous Coward

    It's Macrobiome, jeesh scientists nowdays...
    https://xkcd.com/1471/

  • by Anonymous Coward

    Someone else tried a similar experiment:
    https://groups.google.com/foru... [google.com]

  • Sounds as useful (Score:4, Interesting)

    by fred911 ( 83970 ) on Wednesday May 04, 2016 @06:50PM (#52049693) Journal

    as Slashdot's Disable Advertising toggle lately. Being eligible doesn't mean it's functional.

    • Re: (Score:2, Funny)

      by halivar ( 535827 )

      To be fair, it never actually worked. Not for me.

      • It used to work for me, most of the time anyway. It would randomly reset itself and I'd have to check it again. But, I've noticed that checking the checkbox no longer seems to do anything at all now. Oh well.

      • To be fair, it never actually worked. Not for me.

        It always worked reliably for me, very rarely it'd uncheck itself, but then I'd just recheck it and it'd be good for another 8 months. It's pretty irksome that it's useless now.

    • It resets itself at least once per day on me. In the past, it was for three months or so.

      Why have I been contributing for 10 years?

      Seriously. My constant commentary (highly ranked) is one among the many volunteer efforts by /. members over the last >10 years that raised the value of the 'property' for its recent buy-out by yet another media conglomerate. That means lots of $$$$$ in someone's pocket, yet the meagre reward that I had acquiesced to over the years was to "disable advertising".

      Now that is

    • It works. When it's checked, the ads are replaced with "targeted links".

    • by iONiUM ( 530420 )

      Mine hasn't been working for a month. I sent an e-mail to Slashdot about it, got a canned response, and since then it's disappeared entirely.

      I guess it's "fixed" since I now have no expectation for it to work anymore since it's gone...

    • How is Slashdot related to an article about eating shit?

      Oh. Right.

  • Zayner unwrapped a brand-new syringe and filled its barrel with the brownish liquid. He grabbed one half of a gelatin capsule, pushed the syringe’s plunger, and filled the capsule with the fecal slurry in inconsistent spurts.

    I found a picture of the guy:

    http://2d0yaz2jiom3c6vy7e7e5sv... [netdna-cdn.com]

  • by Greyfox ( 87712 )
    That sounds an awful lot like a German video I ran across a while back. I couldn't understand what little dialogue there was since it was in German, but she sure did seem to be trying to get someone else's gut bacteria into her own gut. And it did look pretty extreme...
  • The bad ones will probably kill themselves, unlike bad computer hackers that just stay on as script-kiddies or bad coders.

  • by BlueCoder ( 223005 ) on Wednesday May 04, 2016 @08:11PM (#52049939)

    Official studies need to happen and soon. We need to find out if sterilizing the gut is actually necessary. In many cases it may be possible to transform an existing gut into another just with fecal matter. We also need to know more about the component bacteria. It is likely possible we could artificially culture a healthy gut biome in an artificial gut. We just need the bacteria and it needs to become tasteless like a powder added to food.

    And cravings and the gut biome need to be thoroughly analyzed. And eating it might not be the ideal to replicate a biome; the digestion in the stomach could kill some bacteria but not others and or alter the concentrations.

    And of course it works. Come on people think. How much do people spend on diets? Once everyone figures out they can lose significant weight this way it will catch on like wildfire. Everyone with gut problems.. would you rather continue to suffer or eat a little shit?

    • Re:Very promising (Score:5, Informative)

      by sjames ( 1099 ) on Wednesday May 04, 2016 @09:41PM (#52050267) Homepage Journal

      There has been research. The treatment is currently approved for C. difficile. Of course the FDA couldn't wait to jump in and slow down the research.

      Delivery methods include a nasal tube, an enema, scope, and enteric coated pills or capsules. The latter is probably the simplest and doesn't release the payload until it is past the stomach.

    • by AmiMoJo ( 196126 )

      You know how there are people who grow their hair long, cut it off and sell it on AliExpress/eBay?

      Actually you can already get something a bit like this. In Japan various potions and beverages that include bacteria for your gut are widely available. I have no idea if they really work... They make me feel better, but it could be placebo.

    • Everyone with gut problems.. would you rather continue to suffer or eat a little shit?

      You'd rather not know what I'd rather eat

  • on the issue of Giant Douche vs. Turd Sandwich...

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