First Digital Simulation of an Entire Life Form 271
An anonymous reader writes "LiveScience is reporting on what appears to be the first digital simulation of an entire life form. Researchers created more than a million digital atoms to reverse engineer the satellite tobacco mosaic virus, a relatively simple organism. But is it really a life form? From the article: 'Viruses are tiny bundles of protein and genetic material that straddle the line between life and non-life. Many scientists prefer to call them "particles" because even though they contain RNA or DNA like other lifeforms, they can only replicate inside other living cells.'"
First Digital Simulation of an Entire Slashdot DUP (Score:2, Informative)
Story is a dupe...original story can be found here [slashdot.org].
Re:First Digital Simulation of an Entire Slashdot (Score:3, Funny)
Re:First Digital Simulation of an Entire Slashdot (Score:2)
Re:First Digital Simulation of an Entire Slashdot (Score:2)
Re:First Digital Simulation of an Entire Slashdot (Score:2)
And since the defendant is also the plaintiff he should have known better.
Re:First Digital Simulation of an Entire Slashdot (Score:2)
Not a troll (Score:2)
Life is not a binary distinction (Score:5, Interesting)
Language is digital (as opposed to analog) in the sense that you either use a word in a sentence or you don't. You can either use the word "life" in a sentence or not but you can't use a fraction of the word ("li" or "fe" don't mean fractional life - or anything at all for that matter). This creates (willful?) confusion in the minds of people who are very focused on a literal interprtation of language based laws and moral codes that "life" is a binary distinction.
The reality, however, is that the word "life" refers to a whole variety of concepts. There are all different ways of being alive and there are all different levels of being alive. Certainly we can find examples of things that are very "alive" just as we can find examples of colors that are very "blue" - but that doesn't mean every color is either pure blue not blue at all and it doesn't mean that something is either completely alive or not alive at all.
Going way off topic, the whole "life begins at conception" is what we in the sciences refer to as "not even wrong". After all, it's kind of hard for dead people to have children. If you really want to talk about when life began it would be at the big bang when matter developed the properties that cause it to form into complex self-replicating patterns over very long time scales.
Re:Life is not a binary distinction (Score:2)
Re:Life is not a binary distinction (Score:5, Insightful)
Oh, without capital letters, they mean nothing -- but I know quite a few chemists who'd dispute that Li and Fe are meaningless.
To get on-topic, I think that humans constantly categorize and assign labels to things as either a member of a group or outside it, which IS binary.
That creature is a fish|not a fish. That creature is a mammal; or it lays eggs and has a bill, so it is a bird (ummm, bad example, on second thought). That rock is igneous; or it is not. That tree is deciduous|not deciduous.
What is the point of defining something if the definition does not allow us to use it to categorize? Things like this virus, and viruses in general, raise the debate over what is life|not life. And that debate can stimulate greater knowledge, and greater understanding, by challenging our assumptions and our definitions... so I'm all for making distinctions when we can.
Re:Life is not a binary distinction (Score:2)
My definition of science would be that it is an attempt to organize and summarize mutually agreed upon factual observations. In that sense, categorizing and assigning labels is very important. On the other hand, the organization and summarizing must be in agreement with the factual observations. If one had a collection of rational numbers (eg. floating point) a
Re:Life is not a binary distinction (Score:2)
Curse those platypus...
Re:Life is not a binary distinction (Score:2)
Human - Tags: Mammal, Biped, Replicates, Respires, Significant Movement, Life Birth etc. etc.
Sunflower - Tags: Plant, Replicates, Leafed, Fixed-Point Movement, Seeds etc. etc.
Virus - Tags: Replicates, Movement etc. etc.
Re:Life is not a binary distinction (Score:2)
I think the original point was that this distinction is usually arbitrary, and only derived from evidence so far observed; so we are constantly finding new things that do not fit neatly into the binary distinction.
That creature is a fish|not a fish. That creature is a mammal; or it lays eggs and has a bill, so it is a bird (ummm, bad example, on second thoug
Nondualism and the intractability of life (Score:2)
The GP makes the point that any distinction we make is artificial and arbitrary, that everything is in fact a continuum.
You make the point that we understand things by categorizing them as X or not-X.
There is a kind of philosophical nondualism (c.f. Taoism) which encompasses both of these concepts. It is the notion that, while there are no actual distinctions in reality as separate from our understanding of it (as Kant would say, the "noumen
Re:Life is not a binary distinction (Score:2)
If every self replicating and evolution pattern becomes a form of "life" then "life" is n
Re:Life is not a binary distinction (Score:2)
The whole drive to categorize and
Re:Life is not a binary distinction (Score:2)
I believe the word you are looking for is
Re:Life is not a binary distinction (Score:2, Informative)
you've obviously never heard one of bush's speeches
Re:Life is not a binary distinction (Score:2)
Great Point (Score:2)
For example, ask yourself this: given that a paramecium is considered "life", then which is the living organism -- you, or your cells? Is a heart cell alive, or are you? Or both? If you try to define "life" against the paramecium, the a human isn't a living thing at all, but rather a bizarre cohesive colony of trillions of living thing
"Language is digital" (Score:2)
I disagree. I think language is just mostly digital.
Re:Life is not a binary distinction (Score:2)
Re:Life is not a binary distinction (Score:2)
Good point but it didn't so much evolve from the parasite as it was created by the parasite as an aid. Think of this the same way as me creating a robot to help me get laid!
I just can't see a packet containing programming information as life. Its definatly part of the cycle of life, maybe we could consider it a life weapo
Re:Life is not a binary distinction (Score:2)
Re:Life is not a binary distinction (Score:2)
Re:Life is not a binary distinction (Score:2)
Re:Life is not a binary distinction (Score:2)
The ability of an entity to make copies of itself is not really all the subjective. The ability of an entity to respond to its environment has varying degrees but that really isn't all that subjective either. The ability of an organism to maintain a self-sustaining symbiosis between it's various parts (eg. organs) is really not all t
Simulating intelligence? (Score:5, Insightful)
Re:Simulating intelligence? (Score:3, Insightful)
The line between the organism and the environment is very blurred. I tried to write a cellular autonoma of a weather/ecology system at once stage and was overwhelmed with the sheer number of variables which would have to b
Re:Simulating intelligence? (Score:5, Insightful)
Of course. It would take an absolutely colossal amount of computing power, but given sufficient resources and a complete understanding of the basic physics and chemistry involved (neither of which we have yet) you could absolutely simulate a living creature, and the simulation would be intelligent. There have been many sci-fi stories that have used this basic concept. In fact I expect the first intelligent machine will attain its intelligence by simulating a living brain (although at a much higher level than individual atoms).
If we assume that all physical processes can be simulated by a computer (given complete knowledge of the laws of physics), which seems to be a safe assumption, the question boils down to "is intelligence a physical process?" Everything we know about the brain's operation says that the answer is a resounding "yes" -- and if intelligence is merely a manifestation of the physical operation of the human brain, then there is nothing about it that can't, at least in theory, be simulated.
Re:Simulating intelligence? (Score:2)
I believe that we should worry about size and power consumption before we get to the rather philosophical aspects. Afterall the human brain is still by magnitudes more complex than any computer we can build nowadays (not taking into account computers bigger than our solar system and/or
Re:Simulating intelligence? (Score:2, Insightful)
I read a quote somewhere related to that idea. It was somthing to the effect of "in that case Einsteins mother must have been one hell of a physicist".
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:3, Informative)
"Anything created must necessarily be inferior to the essence of the creator."
-- Claude Shouse (shouse@macomw.ARPA)
"Einstein's mother must have been one heck of a physicist."
-- Joseph C. Wang (joe@athena.mit.edu)
Re:Simulating intelligence? (Score:2, Insightful)
Sure, but who talked about a human brain?
Personally I'll content myself with a virtual genuinely intelligent simulated bug.
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2, Informative)
Aha, but your given is anything but, and hence your asumption isn't so safe.
Re:Simulating intelligence? (Score:2)
I never said that we had complete knowledge of the laws of physics. The point was that it seems pretty safe to assume that if we had complete knowledge of the laws of physics, we could fully simulate physical interactions on a computer.
There's no way to know for sure, of course, but so far all of the physical laws we know are computable. There is no particular reason to suspect that any of the remaining ones aren't.
Re:Simulating intelligence? (Score:3, Insightful)
I believe you are wrong and we already possess sufficient physical knowledge and have for years. As far as I understand it, the Schrödinger equation [wikipedia.org] (and perhaps some other quantum mechanical theories) allows us to model the behavior of electrons completely. All the interactions involved in biochemistry are simply a result of electron behavior (nuclear reactions do not affect life significantly). This
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:3, Insightful)
As far as I understand it, the Schrödinger equation (and perhaps some other quantum mechanical theories) allows us to model the behavior of electrons completely
IWAQC (I Was A Quantum Chemist), so I'll bite. In theory, this is true. All you have to do is solve the Schrodinger equation for the system and you're done. The problem is that we can only solve it exactly for a few systems, the most complex being the hydrogen atom. Even the He atom is beyond our abilities, at least in the realm of exactn
Re:Simulating intelligence? (Score:3, Informative)
Re:Simulating intelligence? (Score:2)
Are you really sure that cognitive processes, or for that matter all that goes into making a functioning consciousness only involves symbolic systems?
LS
Re:Simulating intelligence? (Score:5, Funny)
Of course. It would take an absolutely colossal amount of computing power, but given sufficient resources and a complete understanding of the basic physics and chemistry involved (neither of which we have yet) you could absolutely simulate a living creature, and the simulation would be intelligent. There have been many sci-fi stories that have used this basic concept. In fact I expect the first intelligent machine will attain its intelligence by simulating a living brain (although at a much higher level than individual atoms).
Dude, this is going to blow your mind. [tamagotchi.com]
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
Would you consider a bacterium intelligent? I bacterium is several orders of magnitude more complex than a virus. How about an ameoba? Again, several orders of magnitude more complex than a bacterium? Perhaps a jellyfish? A nematode?
The pure simulation method is unlikely to ever be used in developing an artificial intelligence. An
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
That is a rather ridiculous standard. We don't even know if you see the same thing I do when I see something red. We also don't know if you feel the way I do when I'm depressed. My conception of depressed could be entirely different than yours.
Take some acid and have a conversation about the "levels" of reali
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
It is theoreticaly possible (although it would be many orders of magnitude more difficult than the virus simulation), but the real question is - would such an experiment yield much insight into the nature of intelligence or give us any foothold toward developing an artificial intelligence suited to our needs? While it would enable
Re:Simulating intelligence? (Score:3, Interesting)
Re:Simulating intelligence? (Score:2)
From a philosophical perspective? Depends who you ask.
Most of the philosophers I know of are still talking about Turing's Computing, Machinery and Intelligence [abelard.org] paper of 1950, which focuses on simulation of conversation (hence Turing Test) rather than learning systems or simulated life such as this.
JR Searle [wikipedia.org] gives some pretty good reas
Re:Simulating intelligence? correction (Score:2)
whoops.
Re:Simulating intelligence? (Score:2)
You're correct that Strong-AI would have to learn for itself, and indeed a program that could learn language just by observing, say,
Re:Simulating intelligence? (Score:2)
There's a bit of a problem in restricting intelligence to strict definition. I mean, Skinner [wikipedia.org] would have held that all humans do is respond to external stimuli, and hence he (or at least some behaviourists) would be perfectly happy to accept that we really are not intelligent, but instead are 'mere automata'.
I don't think it's possible to come up with a kind of tick list for what something must have or be capable of i
Re:Simulating intelligence? (Score:2)
Re:Simulating intelligence? (Score:2)
I Hope... (Score:4, Funny)
Move along, nothing to see here... (Score:5, Funny)
Re:Move along, nothing to see here... (Score:2)
This is an interesting coincidence because I used to reflect deeply on this exact subject a few years ago: what if a supercomputer could simulate a human ? I'll be honest here: I am literally _astounded_ to discover that this scientific team has successfuly simulated a virus. I didn't thought supercomputers were powerful enough for such a task. I just finished reading some articles about the experience and I now understand why thi
Re: (Score:2, Redundant)
Re:Life vs. Non-life (Score:2)
No, Cuckoos and cowbirds have all the needed apparatus for procreation. Viruses on the other hand generally require the transcriptional "machinery" of a host cell in order to reproduce.
Some people consider viruses to be the most complex thing which doesn't live, while others say it is the least comlex living thing.
I say they're non living due to their lack of respiration, complete reproductive apparatus, and lack of a cell membran
Re:Life vs. Non-life (Score:2)
Re: (Score:2)
Re:Life vs. Non-life (Score:2)
If you want us regular slashdotters to follow your arguments, please stop using all the complex biology jargon you learned in graduate school.
Re:Life vs. Non-life (Score:4, Interesting)
Me, I subscribe to structuralism.
Duplicate; here's a link to the research anyway. (Score:3, Informative)
first simulation? (Score:2)
But even if this is a complete simulation: Is it really that interesting to watch such a simulation if it doesn't interact with other models of the same quality? It's not that interesting to watch a allegedly perfect simulation of a virus on its own, because results are not going to vary much
Re:first simulation? (Score:2)
Sure. Being able to take the together the basic building blocks (atoms), arrange them into molecules (amino acid residues), which then can be chained together (macromolecules), which fold accurately depending on the various electrical, hydrophobic, and van der Waals forces (proteins), which further interact properly with their neighbors and form stable complexes (capsid subunits) which can
Its awesome (Score:3, Interesting)
Next I wonder if the computer can be used to run regression tests to create the ideal bacteria or virii for a given situation. Virii can be built to repair human DNA in various ways... a particularly disadvantageous gene can be switched off throughout the body once infected with the virus.
Of course this only allows Cybernet to have more destroying power once it 'wakes up'.
Re:Its awesome (Score:2)
Oh wait... [spore.com]
Re:Its awesome (Score:2)
Why? 4GB of RAM means 4kb of ram per molecule (or was it atom?)
Computers with 32GB of ram (AIX, sun) arent the most expensive ones around. I dont think each molecule needs 4kb of data including its properties and interactions. Several million particles should be possible in a midsized server's ram entirely.
Simulation of an entire lifeform, my ass! (Score:5, Informative)
And that word 'lifeform' - it brings the quality of the reporting down to the level of Star Trek psychobabble. Try 'organsim', or even 'virus', next time.
Re:Simulation of an entire lifeform, my ass! (Score:2)
You are not a life form, then? (Score:3, Interesting)
The same could be same for most species of animals; they ``contain RNA or DNA like other lifeforms, they can only replicate inside other living organisms''.
Cigar Store Indian (Score:5, Funny)
That sounds like the greatest hits of American products, all in one convenient album.
Hey . . . (Score:2, Funny)
"life" is a lousy line to draw (Score:3, Interesting)
Re:"life" is a lousy line to draw (Score:2)
"Simulation?" (Score:2)
Can you drop the word "simulation"? If it's simulated from the ground up, it's (in its environment) indistinguishable from the real-life version (here assuming the simulation is proper). So let's be provocative and just say it's a digital life-form.
If you can't call it life... (Score:2)
then what do you call us? We can only replicate at gamer and star trek conventions.
It's all fun and games until it infects the Net! (Score:2)
Digital Religion (Score:2)
the debat of life/ non-life (Score:2)
life must exhibit certain characteristics.
the simplest two characteristics are
reproductivity
autonomous function
so a virus must have two classifications.
active and inactive
active virii are those currently 'living' in a cell or some other construct that support basic life functions such as allowing autonomous function and reproduction.
inactive virii are simply particles with a life-like construction. they have no autonomous functions and cannot reproduce even when paired wi
My questions (Score:2)
Life and the living (Score:3, Funny)
The only thing that is reasonably clearly defined is 'living orgnism'; and as several posts have already pointed out, viruses can't quite be called living organisms; not because the don't display life, but because they are too simply to qualify as organisms. However, they do have life proceses - eg. they reproduce.
How can one define the concept 'life'? It is a difficult one - there are many that feel it would be too narrow to define it simply as the set of chemical processes that we know from biology; among other things, there is no sharp boundary between simple non-organic chemistry and 'life-chemistry'. There are some that define life as chemical evolution (http://en.wikipedia.org/wiki/Chemical_evolution [wikipedia.org]) - this theory has the advantage that it can be generalised; all that is needed is a good generalisation of 'chemistry'.
Life = Non-life (Score:3, Insightful)
Why virii are not alive (Score:5, Informative)
Re:I don't get it (Score:4, Insightful)
Re:I don't get it (Score:2, Informative)
They're relying on their host for basic life functions, such as reproduction (OK, bad example as you have flowers/bees and so on) and even respiration. Every life form relies on something external for a food source, that's fair enough, but if you call a virus alive then you might as well say genes are life forms in their own right.
Re:I don't get it (Score:2)
In other words, they're hackers.
Re:I don't get it (Score:5, Insightful)
There is no such thing as "life" we invented a classification without defining it and therefore we have a debate. The only reason we even find it to be important is that we are still trying to come up with excuses to think of ourselves as something more than a random cluster of protein soup.
Re:I don't get it (Score:2, Insightful)
Re:I don't get it (Score:2)
Humans programmed this thing to do what it does, whereas "life" as we know it is of still-unknown origins.
But then again, what the hell do I know about anything?
Re:Oh yes, now I get it! (Score:3, Insightful)
There is a very substantial difference there.
Re:Oh yes, now I get it! (Score:3, Insightful)
You're confusing concepts with their labels.
He's not saying there's no such thing as life, which is easily falsified. He's saying the concept "life" is arbitrary, and that the boundaries of that concept are arbitrary: there are seven specific conditions you need to meet to be officially alive. Why those particular 7? What if we changed the list to 6 or 8?
Having dreamt up a classification called "alive" it's e
Re:Old news (Score:2, Funny)