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Science

Scientists Discover How the SARS-CoV-2 Virus Evades Our Immune System (scitechdaily.com) 146

Long-time Slashdot reader fahrbot-bot quotes SciTechDaily: A discovery by researchers at the Texas A&M College of Medicine could lead to new therapies to prevent the virus from proliferating in the human body... The underlying mechanism of how SARS-CoV-2 escapes from the immune system has been poorly understood. However, researchers from the Texas A&M University College of Medicine and Hokkaido University have recently discovered a major mechanism that explains how SARS-CoV-2 can escape from the immune system and replicate in the human body. Their findings were recently published in the journal Nature Communications.

"We found that the SARS-CoV-2 virus carries a suppressive gene that acts to inhibit a human gene in the immune system that is essential for destroying infected cells," said Dr. Koichi Kobayashi, adjunct professor at the College of Medicine and lead author of the paper.

Naturally, the cells in a human's immune system are able to control virus infection by destroying infected cells so that the virus cannot be replicated. The gene that is essential in executing this process, called NLRC5, regulates major histocompatibility complex (MHC) class I genes, which are genes that create a pathway that is vital in providing antiviral immunity. Kobayashi and his colleagues discovered this in 2012.

"During infection, the amount and activity of NLRC5 gene become augmented in order to boost our ability of eradication of viruses," Kobayashi said. "We discovered that the reason why SARS-CoV-2 can replicate so easily is because the virus carries a suppressive gene, called ORF6, that acts to inhibit the function of NLRC5, thus inhibiting the MHC class I pathway as well."

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Scientists Discover How the SARS-CoV-2 Virus Evades Our Immune System

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  • How good will that immunity be? If it's not perfect immunity that PREVENTS the virus from jumping hosts, we will just end with even more powered up variants of the virus.
    Leaky vaccines for fast mutating viruses like Covid, combined with the fact that it's a worldwide pandemic exposed to every kind of human organism available on the planet, means that this is an attrition battle of who runs out of resources first.
    And something tells me that the virus won't be running out of mutations any day soon.

    • by acroyear ( 5882 )

      it isn't evading it 100%. if it did, it would be 100% fatal. If it did, the vaccines would have been useless from the beginning, only delaying the inevitable by fighting loose virus through antibodies and t-cells but not much more than that, and being outnumbered by the virus in the case of Delta's rate of replication within a host cell (this is where Omicron, derived from Alpha, seems less severe: it isn't reproducing as much per infected cell that Delta does, even thought it is able to infect cells more

      • It's a little confusing, though. The vaccine sets up the immune system to recognize and attack the *surface* spike protein structure; it's the viral *infection* that turns off the gene for recognition. So it seems like:
        • If the vaccine gets to the immune system first, everyone's on the lookout for an intruder's spike, and can stop them on sight.
        • No vaccine, and everyone's on regular patrol but not on high alert [explainxkcd.com], so if a couple viruses sneak through the grass at night and start karate-chopping a few immu
    • by Muros ( 1167213 )
      A much more important question is, is dosing yourself with horse de-wormer a good indicator of your likelihood of being exposed to the virus?
      • A much more important question is, is dosing yourself with horse de-wormer a good indicator of your likelihood of being exposed to the virus?

        Not really.
        It's a very strong indicator of your likelihood of being exposed to the vaccine though unfortunately.

  • Kobayashi ? (Score:4, Funny)

    by weirdow ( 9298 ) on Sunday December 12, 2021 @02:01PM (#62072661) Homepage

    Kobayashi Maru is a no win scenario.

    Quickly someone get into the code and change the parameters so we can finally have a win and get out of this pandemic.

    Live long & prosper !

  • It's be interesting to trace the history/evolution of this gene. It apparently only exists in SARS-COV-1 and SARS-COV-2.

    How does this even get into a virus?

    • Evolution.
      • > Evolution.

        Sure, evolution just means change, so obiously evolution. But was it created by natural mutation and recombination or by engineering?

    • A quick Google leads to this [nih.gov]: "Based on its similarity to other coronavirus proteins..."

    • PFAM lists the following [xfam.org] in the protein family:

      • Bat coronavirus 279/2005 (BtCoV) (BtCoV/279/2005)
      • Bat SARS-like coronavirus YNLF_31C
      • Severe acute respiratory syndrome coronavirus (SARS-CoV)
      • Bat SARS-like coronavirus WIV1
      • BtRs-BetaCoV/HuB2013
      • SARS coronavirus WH20
  • "said Dr. Koichi Kobayashi,"

    He's Keyser Söze.

  • Looking at their R code, it was last updated 7 months ago.

    This suggests that the results were known before May, pre-Delta surge.

    The clinical implications of understanding the interferon-blocking effects are significant.

    I get that a Nature publication is significant and the result is very ground-breaking, but that's a long time to sit on clinically-relevant information given the state of the world.

    • by ceoyoyo ( 59147 )

      I'm not sure what's going on in the summary, but the role of ORF6 isn't news. There were a bunch of papers about it in 2007 after SARS1. There have also been a bunch of other papers in 2020 and 2021 about SARS2.

  • Antivaxxers will avoid them all because ???

    • Antivaxxers will avoid them all because ???

      You can't fix stupid....

      • Covid fixes stupid.
    • by Anonymous Coward

      Because what's currently available doesn't work.

      Can a triple vax get covid? Yes
      Can a triple vax spread covid? Yes
      Do the triple vax die from covid? Yes

      Other than at risk people (old, obese) there is no reason to get it except for covidian virtue signaling.

    • Well, can't speak for all "anti-vaxxers," but this one will avoid the "vaccine" because it is causing severe heart issues even in younger people, and also known to cause ADE (antibody-dependent enhancement), and also has provoked more VAERS reports in one year than all other vaccines combined for the past 30, and also because it may very well have longer-term issues that we don't know because they simply haven't had time to manifest yet.

      Read stuff other than what the government and other vested interests te

  • "Although the introduction of COVID-19 vaccines, such as the Pfizer and Moderna vaccines, can lower an individual’s chance of contracting the virus, there is currently no permanent therapy that can entirely prevent a human from contracting SARS-CoV-2.

    “We hope that this new discovery will allow us to develop a new drug that can block this gene so our immune system will be able to fight off the coronavirus for good,” de Figueiredo said."

    If we can get a therapeutical to target this pathway, i

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