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Science

Confusion and Criticism Over ENCODE's Claims 34

As_I_Please writes "In response to the previous report of the ENCODE project discovering 'biochemical functions for 80 percent of the genome,' many scientists have questioned what was meant by 'function.' Ars Technica Science Editor John Timmer wrote an article calling ENCODE's definition of functionality 'broad to the point of being meaningless. At worst, it was actively misleading.' Nature magazine also has a followup discussing the ambiguity surrounding the 80% figure and claims about junk DNA."
Earth

Around 200,000 Tons of Deep Water Horizon Oil and Gas Consumed By Bacteria 170

SchrodingerZ writes "The University of Rochester and Texas A&M University have determined that in the five months following the Deepwater Horizon Disaster in the Gulf of Mexico, bacteria have consumed over 200,000 tons of oil and natural gas. The researched was published in the journal Environmental Science and Technology (abstract). 'A significant amount of the oil and gas that was released was retained within the ocean water more than one-half mile below the sea surface. It appears that the hydrocarbon-eating bacteria did a good job of removing the majority of the material that was retained in these layers," said co-author John Kessler of the University of Rochester.' The paper debuts for the first time 'the rate at which the bacteria ate the oil and gas changed as this disaster progressed, information that is fundamental to understanding both this spill and predicting the behavior of future spills.' It was also noted that the oil and gas consumption rate was correlated with the addition of dispersants at the wellhead (video). Still, an estimated 40% of the oil and natural gas from the spill remains in the Gulf today."
Biotech

GAO Slams DHS Over BioWatch Biological Defense System 88

Mansing writes "Citizens need to evaluate if they are indeed safer for all the 'security precautions' put into place. 'The U.S. Department of Homeland Security has rushed to acquire a new, multibillion-dollar version of the BioWatch system for detecting biological attacks without establishing whether it was needed or would work, according to a new report by a nonpartisan investigative arm of Congress. ... The existing system's repeated false alarms have triggered tense, high-stakes deliberations over whether to order mass evacuations, distribute emergency medicines or shut down major venues.' Is this just more money funneled to U.S. companies, or is this really keeping the U.S. safer? Are the same types of 'security precautions' being instituted in Spain and the UK? Or is this preying on fear a uniquely U.S. phenomenon?"
Biotech

Exposing the Machinery of the Resistome 23

aarondubrow writes "2011 Nobel Prize Winner, Bruce Beutler, is using the Ranger supercomputer at The University of Texas at Austin for an ambitious new project to discover all of the genes involved in the mammalian immune response – the so-called 'resistome.' Over several years, Beutler's lab will sequence the protein coding portions of genes in 8,000 mice to detect the impact of mutations on immunity. This means scanning, enriching and sequencing 500 billion base pairs every week. The project represents a 'Big Data' problem of the highest order."
Science

Synthetic Materials Set New World Record For Greatest Amount of Surface Area 96

Zothecula writes "Researchers at Northwestern University, Illinois, have broken a world record in the creation of two synthetic materials, named NU-109 and NU-110, which have the greatest amount of surface areas of any material to date (abstract). To put this into perspective: if one were able to take a crystal of NU-110 the size of a grain of salt, and somehow unfold it, the surface area would cover a desktop. Additionally, the internal surface area of just one gram of the new material would cover one-and-a-half football fields."
Space

How Does the Tiny Waterbear Survive In Outer Space? 119

DevotedSkeptic sends this excerpt from SmithsonianMag: "The humble tardigrade, also known as a 'waterbear' or 'moss piglet,' is an aquatic eight-legged animal that typically grows no longer than one millimeter in length. Most tardigrades (there are more than 1,000 identified species) have a fairly humdrum existence, living out their days on a moist piece of moss or in the sediment at the bottom of a lake and feeding on bacteria or plant life. In 2007, a group of European researchers pushed the resilience of this extraordinary animal even further, exposing a sample of dehydrated tardigrades to the vacuum and solar radiation of outer space for 10 full days. When the specimens were returned to earth and rehydrated, 68 percent of those that were shielded from the radiation survived, and even a handful of those with no radiation protection came back to life and produced viable offspring. How do the little tardigrades survive such a harsh environment? Although amateur tardigrade enthusiast Mike Shaw recently made waves by postulating that the animals may be equipped to survive in outer space because they originally came from other planets, scientists are certain that the creatures developed their uncommon toughness here on earth."
Cloud

Scientists Built the 'Hubble Telescope For the Ocean' Using the Cloud 36

New submitter stacey7165 writes "VMware shared the application architecture story of how they worked with the Ocean Observatory Initiative to build a 'Hubble Telescope' of the ocean. It's comprised of a massive network of global, regional, and coastal sensors that send information to a common framework called the Common Operating Infrastructure (COI). The COI resides in a hybrid cloud powered by VMware and Amazon. To cope with a total of 49 classes and over 700 instruments deployed off of 6 coastlines, and a variety of consumption use cases, the Ocean Observatory Initiative built out the system using a variety of sub-systems loosely coupled through a messaging system powered by RabbitMQ called an 'Exchange.' Organized into a system where message clients pubsub from 'Exchange Points' and 'Exchange Spaces', the system is easier to maintain, extend, and scale. According to the OOI's documentation on release 1, the Integrated Observatory Network uses AMQP 0.9.1 and RabbitMQ-Server v. 2.3.1 on CentOS 5.5."
Space

Amateur Astronomers Spot Jovian Blast 86

RocketAcademy writes "Spaceweather.com reports an explosion on Jupiter, which was detected by two amateur astronomers. According to Spaceweather.com, the event occurred at 11:35 Universal Time on September 10. Dan Peterson of Racine, Wisconsin, observing through a 12-inch Meade telescope, observed a white flash lasting for 1.5-2 seconds. George Hall of Dallas, Texas was capturing a video of Jupiter at the time, which also captured the event. It's believed that the explosion was due to a comet or small asteroid collision. Similar events were observed in the past, in June and August 2010."
Math

Ask Slashdot: What To Do With Found Calculators? 302

New submitter Covalent writes "I'm a science teacher and have, over the years, accumulated a number of lost graphing calculators (mostly TI-83s). After trying to locate the owners, I have given up and have been loaning them out to students as needed. I want to something more nerd-worthy with them, though. I would feel wrong for selling them. What is the best use for bunch of old calculators?"
Science

Researchers Create Short-term Memories In Rat Brains 114

An anonymous reader writes "Researchers say they've found a way to store artificial short-term memories in isolated brain tissue. 'This is the first time anyone has found a way to store information over seconds about both temporal sequences and stimulus patterns directly in brain tissue,' says the study's lead. 'This paves the way for future research to identify the specific brain circuits that allow us to form short-term memories.' The peer-reviewed study can be found here (paywalled)."
Math

Possible Proof of ABC Conjecture 102

submeta writes "Shinichi Mochizuki of Kyoto University has released a paper which claims to prove the decades-old ABC conjecture, which involves the relationship between prime numbers, addition, and multiplication. His solution involves thinking of numbers not as members of sets (the standard interpretation), but instead as objects which exist in 'new, conceptual universes.' As one would expect, the proof is extremely dense and difficult to understand, even for experts in the field, so it may take a while to verify. However, Mochizuki has a strong reputation, so this is likely to get attention. Proof of the conjecture could potentially lead to a revolution in number theory, including a greatly simplified proof of Fermat's Last Theorem."
Crime

The Fight To Reform Forensic Science 93

carmendrahl writes "Despite a 2009 report from the National Academy of Sciences that found the science in crime labs wanting, very little reform of forensic science has taken place. At a session about the Innocence Project, a group that exonerates prisoners with DNA evidence, speakers called on chemists to join the fight for reform. But forensic chemists don't all agree on what needs reforming."
Math

Fujitsu Building Robot To Pass Math Exams 75

itwbennett writes "Pity those poor Japanese students who attend cram schools, either full time or in addition to their regular schooling, to have a shot at passing the grueling math entrance exams for Tokyo University. If Fujitsu has its way, those students will be upstaged by a robot. The company has set a goal for the year 2021 of building an artificial intelligence robot that can pass the exams."
Science

CERN's Higgs Boson Discovery Passes Peer Review Publication Hurdle 73

MrSeb writes "CERN's announcement on July 4 — that experiments performed by the Large Hadron Collider had discovered a particle that was consistent with the Higgs boson — has passed a key step towards becoming ratified science: Its findings have been published in the peer-reviewed journal Physics Letters B, effectively becoming science in the process. Before we actually know what the new particle is, CERN, the LHC, and the CMS and ATLAS teams must perform additional tests. The LHC had been scheduled to shut down for upgrades, but following the July announcement it has instead been smashing protons together nonstop, to produce more data for CMS and ATLAS to analyze. By December, it is hoped that both teams will have a much better idea of the properties of the new particle, and whether it is actually the Higgs boson."
Space

Space Vs. Poverty Debate In India 315

MarkWhittington writes "Indian Prime Minister Manmohan Singh was obliged recently to defend his country's space program, which involves the spending of billions of rupees when India still has a large number of people living in abject poverty. The debate raging in India parallels a similar one that has simmered in the United States for decades."
Education

The Problems With Online Math Classes 285

dcollins writes "As a college instructor specializing in statistics, I felt compelled to survey one of the massive-enrollment online education courses that are all the rage these days. This summer, it seemed a perfect opportunity when Udacity unveiled Introduction to Statistics by founder Sebastian Thrun (of Google autonomous car fame). Having taken the entire course through to the final exam, my overall assessment is: It's amazingly, shockingly awful. Some nights I got seriously depressed at the notion that this might be standard fare for college lectures encountered by many students during their academic careers. I've tried to pick out the Top 10 problems with the course structure and address them in detail."
Mars

Despite Clay Minerals, Early Mars Might Have Been Dry 105

astroengine writes "Early Mars may not have been as warm or wet as scientists suspect, a finding which could impact the likelihood that the Red Planet was capable of evolving life at the time when it was getting started on Earth. A new study presents an alternative explanation for the prevalence of Mars' ancient clay minerals, which on Earth most often result from water chemically reacting with rock over long periods of time. The process is believed to be a starting point for life."
NASA

A Few Photos From Secretive Blue Origin: Is That a Crew Capsule? 70

RocketAcademy writes "Among the emerging commercial space transportation companies, Blue Origin is the most secretive and mysterious. A VIP tour by NASA Deputy Administrator Lori Garver afforded a rare glimpse inside Blue Origin's headquarters, including a look at what appears to be a Blue Origin crew capsule."
Medicine

Yosemite Expands Scope of Hantavirus Warning: More than 20,000 At Risk 76

redletterdave writes "In response to a recent outbreak of a deadly pulmonary disease commonly carried by mice and other rodents, Yosemite National Park has doubled the scope of those likely infected by hantavirus. Given the rising number of confirmed cases (currently eight) and deaths (three), U.S. officials have effectively sounded a worldwide alert for more than 22,000 local and international visitors that may have been exposed to the deadly virus. Health officials initially believed as many as 10,000 people were at risk to contracting the hantavirus after staying in Yosemite's popular Curry Village lodging area between the months of June and August.; unfortunately, that 10,000 'at risk' estimate was low. Officials expanded the warning this week to an additional 12,000 visitors to Yosemite's High Sierra camps, now that the eighth case of hantavirus was confirmed in a man who stayed in those camp areas. Furthermore, more than 2,500 of those individuals currently live outside the United States."

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