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Medicine

Scientists Say a Now-Dominant Strain of the Coronavirus Appears To Be More Contagious Than Original (latimes.com) 200

Scientists have identified a new strain of the coronavirus that has become dominant worldwide and appears to be more contagious than the versions that spread in the early days of the COVID-19 pandemic, according to a new study led by scientists at Los Alamos National Laboratory. From a report: The new strain appeared in February in Europe, migrated quickly to the East Coast of the United States and has been the dominant strain across the world since mid-March, the scientists wrote. In addition to spreading faster, it may make people vulnerable to a second infection after a first bout with the disease, the report warned. The 33-page report was posted Thursday on BioRxiv, a website that researchers use to share their work before it is peer reviewed, an effort to speed up collaborations with scientists working on COVID-19 vaccines or treatments. That research has been largely based on the genetic sequence of earlier strains and might not be effective against the new one.

The mutation identified in the new report affects the now infamous spikes on the exterior of the coronavirus, which allow it to enter human respiratory cells. The report's authors said they felt an "urgent need for an early warning" so that vaccines and drugs under development around the world will be effective against the mutated strain. Wherever the new strain appeared, it quickly infected far more people than the earlier strains that came out of Wuhan, China, and within weeks it was the only strain that was prevalent in some nations, according to the report. The new strain's dominance over its predecessors demonstrates that it is more infectious, according to the report, though exactly why is not yet known.

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Scientists Say a Now-Dominant Strain of the Coronavirus Appears To Be More Contagious Than Original

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  • by cayenne8 ( 626475 ) on Tuesday May 05, 2020 @02:51PM (#60025246) Homepage Journal
    ...or also more deadly?

    That's the main thing I"d be worried about.

    • by 93 Escort Wagon ( 326346 ) on Tuesday May 05, 2020 @02:58PM (#60025282)

      A cursory read through the linked article states (fairly far down) that they don't have any evidence the new strain is more deadly.

      "The Los Alamos study does not indicate that the new version of the virus is more lethal than the original. People infected with the mutated strain appear to have higher viral loads. But the study’s authors from the University of Sheffield found that among a local sample of 447 patients, hospitalization rates were about the same for people infected with either virus version."

      • by Dasher42 ( 514179 ) on Tuesday May 05, 2020 @03:45PM (#60025494)

        A cursory read through the linked article states (fairly far down) that they don't have any evidence the new strain is more deadly.

        This would be consistent with typical evolutionary pressures on biological viruses. They're integral to our ecosystem, and 11% of our DNA as human beings have viral origin. Some of it is even active: https://newsroom.uw.edu/news/g... [uw.edu]

        It's a simple fact of life; meiosis and mitosis have never been the only common means of gene transfer, and the less harm but more spread a virus has, the more successful it is at propagating itself. Not all of them cause illness; some are even our allies. Pandemics are usually symptoms of a disrupted environment - like destroyed wildlife habitats and the notorious wet markets - introducing harmfully imbalanced lifeforms and their genes to each other with terrible consequences, but in the long run, they settle down, they become unnoticeable, and in a few cases become beneficial or integral. But one thing for sure: some of them are vital parts of life evolving on earth.

        Here's hoping that we stop the suffering of the plague, but in addition to that, I hope we get versed as a species in how to be a part of an overall healthy ecosystem, because our well-being ties into that of almost everything else alive on this planet.

    • by fahrbot-bot ( 874524 ) on Tuesday May 05, 2020 @03:12PM (#60025356)

      ...or also more deadly?

      That's the main thing I"d be worried about.

      Well...
      (1) Just more deadly will affect individuals.
      (2) Just more infectious will infect more people, which will also cause more deaths.
      (3) More infectious and more deadly will be the worst with both.

      So they all sound bad, in that order.

      • ...or also more deadly?

        That's the main thing I"d be worried about.

        Well...
        (1) Just more deadly will affect individuals.
        (2) Just more infectious will infect more people, which will also cause more deaths.
        (3) More infectious and more deadly will be the worst with both.

        So they all sound bad, in that order.

        Or
        (0) It's exactly the same and more widespread for other reasons.

        Angela Rasmussen, a virologist at Columbia University, is even more skeptical of the team’s conclusions than Hanage.

        “They didn’t do a single experiment, and this is all conjecture,” she told Gizmodo. “There’s no indication that this mutation makes the virus more transmissible, and they’ve done nothing to show that this mutation is functionally significant.”

        It could be more widespread because Europe just had way more cases.

        It’s generally agreed the outbreaks of covid-19 that have swept across the world largely originated from strains of the virus that emerged from Europe, following the introduction of the virus from China last year. But that doesn’t necessarily indicate the virus meaningfully changed there to accomplish this feat.

        “The great majority of sequenced isolates now descend from the European outbreak, which has spread more extensively than the Chinese one. That could be because it is more transmissible, but it could also be because the relatively late interventions allowed it to spread more,” Hanage told Gizmodo.

        Most places stopped travel from China before they stopped travel from Europe.
        Hypothetically a country could get 100 cases from China and 1000 from Europe. The European version would dominate even if they were functionally identical. Just due to the fact they had a bigger headstart.

    • Evolution favours increasing infectiousness but decreasing lethality: if the host dies before spreading the virus it will not get far. However, if this is now the dominant strain then it does not seem to be any more lethal than the original Chinese version given the published fatality rates.
      • by gtall ( 79522 )

        It depends upon how long it takes to kill the host.

        • It depends upon how long it takes to kill the host.

          According to the article it has been dominant since mid-March. Most deaths seem to occur within ~3 weeks of initial symptoms so we would have already seen any significant change in lethality.

        • Well, if it takes 40 years, nobody will bother.

          Hence people still acting as if large amounts of pure short acellular carbs and heated dairy weren't deadly.

      • Also kind of obvious that the strain the is most infectious is the dominant one...

        • Also kind of obvious that the strain the is most infectious is the dominant one...

          Obvious, but not necessarily correct.

          If you quarantine China and 50 cases slip through. And then 4 weeks later quarantine Europe but 7,000 already sliped through.
          The European strain is going to dominate even if the 2 strains are functionally identical.

      • Evolution doesnâ(TM)t care what happens

        • Evolution doesnâ(TM)t care what happens

          This is only true for meanings of "care" that are not applicable to the context of evolution as an emergent process.

      • by crunchygranola ( 1954152 ) on Tuesday May 05, 2020 @04:37PM (#60025714)

        Evolution favours increasing infectiousness but decreasing lethality:.

        It strongly favors increasing infectiousness, decreasing lethality - very little (or none). Few diseases are lethal so quickly that they actually interfere with transmission, and if death comes after their infectious period there is no selective pressure at all. The highly lethal disease plague has never shown selection for being less lethal in humans, Humans however have shown to be selected to be more resistant to plague (selection for a Toll-like receptor groups) due to it high lethality. In fact I cannot think of a single major human pathogen for which selection for decreasing lethality has actually been shown.

        • by dryeo ( 100693 ) on Tuesday May 05, 2020 @08:45PM (#60026594)

          In fact I cannot think of a single major human pathogen for which selection for decreasing lethality has actually been shown.

          What happened to the Spanish flu? Hmm, according to Wiki, it first mutated to a more deadly version, the second wave, then may have mutated to a more harmless version. From https://en.wikipedia.org/wiki/... [wikipedia.org]

          Another theory holds that the 1918 virus mutated extremely rapidly to a less lethal strain. This is a common occurrence with influenza viruses: there is a tendency for pathogenic viruses to become less lethal with time, as the hosts of more dangerous strains tend to die out[5] (see also "Deadly Second Wave", above).

    • Probably about the same.

      It's been obvious from the beginning that there are more than one of these fuckers out there. My guess is, you get one, it's a "mild" case. Catch two or more at once, you're in trouble.

      This explains nicely how a whole cruise ship full of geezers can get infected with only a handful of fatalities -- or a whole church full of them, as we saw in Washington -- while a nursing home somewhere else gets completely wiped out.

      The multiple-infection phenomenon may scale up to cities (NYC) an

    • Why is that the only thing? If it's very infectious but not very lethal, there is an increased risk of further mutations resulting in a new strain that could be very lethal, because more people will be infected,and it's coming in contact with more varied immune systems. COVID-19 is an RNA virus, and they are notoriously better at adapting and mutating than DNA viruses.

    • by idji ( 984038 )
      Yes, it is more deadly, because it is the dominant strain in UK and US, where MOST of the deaths have been, so it has killed MORE people than the older strain.
      • by piojo ( 995934 )

        That's a silly and pedantic definition of "deadly". With that outlook, Ebola and SARS are not deadly.

    • "...or also more deadly?"

      Sorry, I wanted to post a few witty (IMHO) death quotes from discworld but not even death can get past the CAPS filter.

    • by caseih ( 160668 )

      A virus that kills its host also kills itself and eventually goes extinct. Therefore as viruses mutate, even if they become more contagious, they tend to be less deadly over time.

  • Still looking...
    I believe this is also the more deadly variant.
  • If the virus initially was less contagious, perhaps a few odd cases did indeed appear in the US and EU (e.g. in France, as is in the news today), but failed to take hold). Then a second strain came and caused (alongside political delay) the current havoc.

    • by Compuser ( 14899 )

      If you read the paper you can see that the original Wuhan lineage did already take hold before this new one came along. But it is possible that some other variant was spreading and was poorly contagious before the Wuhan lineage took off. This is actually likely if this virus jumped to humans recently. It takes time for these bugs to adapt to new hosts.

  • 'The report's authors said they felt an "urgent need for an early warning" so that vaccines and drugs under development around the world will be effective against the mutated strain.'

    If the new strain is dominant, then it would seem to me that clinical trials of drugs and vaccines would be happening mostly with people infected with this new strain - which is what you would want.

    I don't mean to be glib... but I suspect at least some of the "urgency" is that of the authors wanting to get their names recognize

    • by msauve ( 701917 )
      "clinical trials of drugs and vaccines would be happening mostly with people infected with this new strain - which is what you would want."

      Except even if shown effective, they may be sub-optimal.
      • Yes, but "sub-optimal" is better than "ineffective". If a sub-optimal but widely spread vaccine is not 100% effective, but it is able to reduce Covid-19's R value below 1 (as in, one infected person spreads the virus to less than one new host, on average), then we can squash this. If Remdesivir can only shorten recovery times by 15%, that is 15% more beds and ventilators available for the next patient.

        • by msauve ( 701917 )
          Better is better. And better to adjust now, at the beginning of development, instead of when well into trials and have to start over then.
      • Worse - it might make us think entire valid approaches to a vaccine donâ(TM)t work when in fact they do... just against the wrong virus.

    • Clinical trials were started recently with drugs initially tested before the new strain developed... the timeline alone suggests that there may be a need to re-evaluate drugs in the pipeline for the new strain. If true, the authors seem correct in pushing the urgency of their report to their peers.
    • It's important, because the work being done now to develop drugs and vaccines maybe based on lab samples and analysis done with the older strain that is no longer dominant.

      So yes, clinical trials will likely end up being done with people infected wit the new strain... using drugs developed for the old strain.

      That may or may not matter in the end, but it's important to be aware of so those working on the treatments can factor that into the development *before* they spend more time and resources on a drug tha

    • by dryeo ( 100693 )

      Depends on where the clinical trials etc are done. For now the virus has mostly been stopped from inter-region spread, so the new strain is perhaps only on the east coast of N. America with the weaker strain on the west coast (only 9 new cases here in BC today) so if they do the trials on only the west coast, it would likely be the weak strain their testing against.
      Still lots to learn

  • by Alain Williams ( 2972 ) <addw@phcomp.co.uk> on Tuesday May 05, 2020 @03:08PM (#60025334) Homepage

    the more infectious strain will get into more people faster and so out compete the others. Survival of the fittest.

  • by Anonymous Coward

    I've opined at length about the danger of glycoprotein mutation. This is what makes a virus resistant to a known vaccine.

    When I pointed out a month ago that the virus that was passing around the USA had a different glycoprotein structure than the virus that was originally in Wuhan, I was shouted down and silenced. I tried to raise this exact alarm over a month ago because the vaccine work was and is still being done on an irrelevant strain of the virus.

    I am sure I will be shouted down once again. Whatever.

  • The paper continues a fairly long line of existing evidence that the accumulating mutations are not more deadly than the original. More contagious but not more deadly. That's maybe the good news.
    The bad news is that they see evidence of mutations "migrating" between different viral lineages. If that holds up then the most likely way this could happen is if two or more lineages can infect the same person at the same time so their genetic material can intermingle. That's where you could start to see potential

  • by Vegan Cyclist ( 1650427 ) on Tuesday May 05, 2020 @04:01PM (#60025564) Homepage

    This is no doubt thanks to 5G. The Deep State is sending out signals, telling the virus how to do more damage. It's all in Hillary's emails.

    We need Trump to finish his Covfefe serum stat, to save the planet from this! Please send more bleach and light bulbs to the White House!!

  • Or does a natural immunity against one, from having been sick, protect against the other?

    Also: Time to break out the big guns?: Gene therapy via gene drive.

    • It hasn't been proven that folks have gotten reinfected, the CoVid tests don't accurately measure living viruses in the host. Thus you can wind up with false positives, since the test will count dead virus detritus and virus fragments that haven't cleared out of the host, as well as a current active infection.

  • by AndyKron ( 937105 ) on Tuesday May 05, 2020 @04:59PM (#60025824)
    Just admit it. We're fucked as long as Trump is president.
    • Re:We're fucked (Score:5, Insightful)

      by MightyMartian ( 840721 ) on Tuesday May 05, 2020 @05:46PM (#60026036) Journal

      Except that Trump was just a more belligerent version of how a number of leaders responded. The Chinese government's first response was to have some police show up at the doctor that outed the existence of clusters of infected people and ordered him to shut up. The Brazilian president is behaving like any even dumber version of Trump, and the Prime Minister of the United Kingdom didn't bother showing up to COBRA meetings and publicly bragged that he was shaking lots of hands.

      The few countries, like Taiwan, that responded quickly and decisively, were the ones that hadn't basically abandoned any preparations built during the SARS and MERS outbreaks. In other words, their governments are populated by individuals smart enough to realize that pandemics are a part of being a living organism, and knew that at any time, a new novel pathogen could show up at their doorstep.

      Trump is a symptom of a disease. To see other symptoms, see the right wing and libertarian idiots on this very forum who either deny there is a pandemic, or want to sacrifice tens of thousands of people, when we don't even fully understand the pathogen causing it all. Want to see the definition of delicate snowflakes, see the weekend warriors showing up at the Michigan state legislature with their guns, like somehow they can bluster the virus out of existence. That is my operating definition of a fucking idiot.

  • Isn't that just tickety-boo.

  • by Layth ( 1090489 ) on Tuesday May 05, 2020 @05:59PM (#60026106)

    Maryland acted very early in declaring a state of emergency, stay at home orders, we are wearing masks in stores now.
    I've been wondering why nothing we do seems to slow down the spread of this virus.. a newer, more contagious strain would explain that.

    Its scary how fast this thing has mutated... if it keeps mutating like this we will never have a vaccine for every version. it mutates faster than we can make new vaccines. here is the maryland curve

    https://coronavirus.maryland.g... [maryland.gov]

  • by MrKaos ( 858439 )

    The Y axis of 'flattening the curve' means an extended X axis. This allows more time for the virus to mutate into something more deadly before the populace develops a herd immunity. Then there are the doctors and nurses exposed to the danger and their risk of PTSD from an extended exposure to a mutating virus. Wouldn't discussions of exit strategies to the lockdown be appropriate considering the introduction of surveillance technology?

    By exit strategy (as a criteria for a progressive ending to this loc

  • How did that polybasic furin cleavage site PRRA get into COVID-19?

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