Femtosecond Laser Shatters Viruses 154
wattrlz writes "In a development reminiscent of nineteenth century pseudo-science, the father-son team of Kong Thon and Shaw Wei Tsen recently demonstrated that the tobacco mosaic virus can be destroyed in vitro by nano-scale mechanical resonant vibrations induced by repeated ultra-short pulses from a laser. The total energy required is reportedly far below the threshold for human tissue damage and the technique should generalize to human pathogens. Cleaning stored blood is one obvious application."
RTFA (Score:5, Informative)
Re:How would that work? (Score:4, Informative)
Re:Cells may be safe, but what about their content (Score:1, Informative)
You've never heard of, "Dr. Royal Rife" ? (Score:3, Informative)
Re:What is the threshold for (Score:3, Informative)
RTFA (Score:3, Informative)
From listening to Dr. Tsen, it really does seem to work for free virions floating in solution - but once they unpackage themselves and infect a cell, it does nothing.
Unapplicable (Score:5, Informative)
A nice idea. I must be one of the rather few people who have worked with ultrashort pulsed lasers, Raman scattering, and viruses; and I really appreciate the interest of the concept. But I doubt very much that it will ever be a practical tool. Destroying M13 virus in pure water is a far cry from a real application.
If I understand it correctly, the technique exploits the fact that ultrashort laser pulses are not monochromatic but have a significant band width, to excite a vibrational frequency of the virus through resonant Raman excitation. Or, the vibrational mode of the viral capsid is about 8 cm^-1, and the excitation laser contains both 23,529 cm^-1 (i.e. 425 nm) and 23,521 cm^-1 (the Stokes-shifted matching frequency). If you excite the vibrations of the capsid hard enough it will break, as in the old trick of the singer breaking a glass.
But actually, a 100 fs laser pulse has a rather broad spectrum, and therefore is going to excite much more than just that single vibrational mode. Effect on viruses is claimed at a peak power of 50 MW/cm2 -- that is megawatt per square centimeter -- which is rather respectable, even if the average power is low. So I fear that this technique is not going to be very selective. I suppose that in theory you could also excite the virus with two longer-pulse (i.e. picosecond) lasers tuned to have a specific frequency difference, but then the average power required to get a threshold peak power of 50MW/cm2 is likely to be a problem.
Of course, if you are going to use this on a virus like HIV, you will need to target the immature form (which has a shell of gag protein under the envelope) and the mature form (in which gag has been processed into matrix and capsid). You also need to cope with the irregular structure of the virus, which does not have the icosahedral symmetry of many other viruses, its considerable genetic variability, and its variable morphology. HIV capsids occurs in at least two forms, cone-shaped (most of them) and tubular (less frequent). So its Raman frequency spectrum is likely to be complex and a broadband killer may be what you want -- may be.
The reported excitation is a frequency-doubled pulsed beam at 425 nm, which is violet. Blood strongly absorbs light at such wavelengths; hemoglobin even has an absorption peak there. You would have to tune to the red to do anything useful in blood without killing the blood cells, but a standard frequency-doubled titanium-sapphire laser will really struggle to generate red light -- a yellow-tinged green at 550 nm is about the limit. A different laser technology or a much more complex system (with a parametric oscillator) would be required to get there. And even a red laser might be absorbed enough to make blood boil in the focus of the beam.
Last but not least, even if your could destroy all viral particles in a blood sample, that would by no means make that blood safe! The raison d'etre of viruses is inserting their genome into cells to be replicated there. Destroy all viral particles, and there might still be viral genomes in the cells, as RNA or DNA, ready to replicate in the host; even viral proteins ready for assembly into new viruses. It would still be unacceptably dangerous to use that blood.
Frankly, I think this is a misuse of the technology. If it has any applications at all that will be in the study and detection of viruses, not in decontamination. It might be developed into a simpler, cheaper alternative to CARS microscopy.
Re:i read the fucking article, it is crap! (Score:2, Informative)
Re:Greatly exaggerated (Score:4, Informative)
Viral, bacterial, or any other genetic material is too similar to the host's when you're talking about mechanical disruption. There's no way to destroy one and not the other.
What's unique about viruses in this context is their coat (capsid) which has a very precise structure. It's different enough from anything else and I could imagine it shattering and nothing else being damaged. If this was somehow (as people have pointed out, that would require magic!) being done in a live person, the immune system would attack the broken particles. Hopefully, it would get them all. If not
If it was happening in blood filtration, I'd think you'd have to figure out some way of removing the bits and pieces. Virus particles do self-assemble. And evolution being what it is, this would be a good way of selecting for viruses that are particularly good at self-assembling.
That would be a Bad Thing.
Having read TFA, I still worry (Score:5, Informative)
1. All proteins in your body, and all proteins your body can possibly assemble for a virus capsid (and it must, because that's how virii multiply) are made of the same 20 aminoacids. The result, however, can range from relatively simple enzymes to gigantic mollecules, and they're folded in lots of funny ways too, to work like they're supposed to.
I.e., I wouldn't be _too_ surprised if for _some_ particular frequencies (i.e., some very narrowly defined types of virii), something else in your cells had a resonance on the same frequency. Even if the total power isn't enough to vapourize a cell, it could still be pretty deadly.
2. A capsid isn't a monolythic thing, it's made of several proteins which assemble themselves in that shape. That's how your body produces more capsids for the viruses an infected cell manufactures. It produces the capsid pieces, and those then assemble themselves around the pieces of viral DNA or RNA that were copied too.
So I'm curious exactly in what way are the capsids "shattered" by that resonance. If it shatters the proteins themselves into aminoacids, yeah, that's the end of it. But then, see point 1, I'd worry which other proteins it can destroy like that. If it just shatters the (relatively) weaker bonds between the individual proteins that make the capsid, I would imagine that at least some of them will simply reassemble. Remember they're proteins which are pretty much built to do just that: connect to each other and form a capsid.
3. Their claim that it can shatter HIV virii, while leaving the T cells intact, seems somewhat missing the point. It's the kind of solution that a physicist would imagine, if he doesn't know much about how a virus works.
So let's get a bit into (a very over-simplified summary of) how a cell works, and a virus multiplies. (Warning: it's still a long read.)
Your cells are basically a chemical computer whose function include building more building blocks for itself, or for more copies of itself. Your proteins, for example, are encoded by your DNA, as triplets of nucleotides. One such triplet is a "codon", and it identifies one aminoacid. (With some redundancy. You use 20 aminoacids, but since there are 4 possible nucleotides and there are 3 of them, there are 64 possible combinations. So it's quite usual that 2 or 3 different combinations mean the same aminoacid.)
When a cell needs more of a certain protein, it first copies a segment of DNA to RNA and lets it loose. Each Then a ribosome reads that just like a piece of tape, one codon (group of 3 nucleotids) at a time, and assembles a chain of aminoacids matching that sequence. For each codon, it adds the matching aminoacid to the chain, and moves one position further. One codon means STOP, and when it reached that, it lets go of the newly built protein and stops.
A virus works much the same. It builds more capsids, for example, by just letting loose a chain of RNA in your cell, which contains the information on how to build a capsid piece. (If it's a DNA based virus, it will first have to transcribe it to RNA, same as your cell does.) When enough of those capsid pieces have been built, they assemble themselves in a capsid around such a RNA chain.
At the same time, of course, the virus will also have to get your cell to transcribe the RNA piece. That, however, is just a sub-case of the previous paragraph. One of the proteins encoded by the virus, is the "RNA replicase". It's an enzyme which copies RNA strands. So the virus will let one piece of tape with that information loose inside your cell, the cell transcribes it to RNA replicase, which in turn starts copying RNA strands non-stop. Some will be surrounded by the capsid pieces to form new virii, but some will just keep getting interpreted by your ribosomes, so the cell keeps producing more capsid pieces and more RNA transcriptase.
To sum it up, an infected cell is, essentially, reprogrammed to keep producing viruses until it bursts. It's those pieces of gene
Re:cleaning stored blood? (Score:2, Informative)
-b