Stories
Slash Boxes
Comments

News for nerds, stuff that matters

Slashdot Log In

Log In

Create Account  |  Retrieve Password

Genetic Information on Major Diseases Uncovered

Posted by Zonk on Fri Jun 08, 2007 02:03 PM
from the oh-genes-not-jeans dept.
gollum123 writes "A major advance in the genetic understanding behind several of the world's most common diseases is being reported by the BBC. A study tested some 17,000 people to find genetic markers for the various diseases. 'They found new genetic variants for depression, Crohn's disease, coronary heart disease, hypertension, rheumatoid arthritis and type 1 and 2 diabetes. The Wellcome Trust Case Control Consortium (WTCCC) involved 50 leading research groups analyzing the DNA from 2,000 patients for each of the seven conditions and 3,000 healthy volunteers. One of the most exciting finds was a previously unknown gene common to type 1 diabetes and Crohn's disease, a type of inflammatory bowel disorder, suggesting that they share similar biological pathways.' There is also disease by disease data at the BBC."
+ -
story
This discussion has been archived. No new comments can be posted.
The Fine Print: The following comments are owned by whoever posted them. We are not responsible for them in any way.
 Full
 Abbreviated
 Hidden
More
Loading... please wait.
  • by Anonymous Coward on Friday June 08 2007, @02:06PM (#19442191)
            1 ggaggaggtg gaggaggagg gctgcttgag gaagtataag aatgaagttg tgaagctgag
           61 attcccctcc attgggaccg gagaaaccag gggagccccc cgggcagccg cgcgcccctt
          121 cccacggggc cctttactgc gccgcgcgcc cggcccccac ccctcgcagc accccgcgcc
          181 ccgcgccctc ccagccgggt ccagAcggag ccatggggcc ggagccgcag tgagcaccat
          241 ggagctggcg gccttgtgcc gctgggggct cctcctcgcc ctcttgcccc ccggagccgc
          301 gagcacccaa gtgtgcaccg gcacagacat gaagctgcgg ctccctgcca gtcccgagac
    • Meanwhile, at the NCBI (home of the popular sequence identification algorithm BLAST), the entire programming team is trying to figure out why there's a sudden spike in searches for Homo sapiens v-erb-b2 erythroblastic leukemia viral oncogene homolog 2.
    • The AC enlightened us with:

      1 ggaggaggtg gaggaggagg gctgcttgag gaagtataag aatgaagttg tgaagctgag
      61 attcccctcc attgggaccg gagaaaccag gggagccccc cgggcagccg cgcgcccctt
      121 cccacggggc cctttactgc gccgcgcgcc cggcccccac ccctcgcagc accccgcgcc
      181 ccgcgccctc ccagccgggt ccagAcggag ccatggggcc ggagccgcag tgagcaccat
      241 ggagctggcg gccttgtgcc gctgggggct cctcctcgcc ctcttgcccc ccggagccgc
      301 gagcacccaa gtgtgcaccg gcacagacat gaagctgcgg ctccctgcca gtcccgagac

      I think that part was swapped

      • Sorry, bogus thinking is implemented as an application-level protocol.
        Much as some wish to blame their peccadilloes on the hardware, Paris Hilton had to work at being vacuous.
        • Re: (Score:3, Informative)

          Although Margaret Sanger was indeed a eugenicist she was not a Nazi and in fact considered the Nazis to be "sad and horrible". Actually the biggest supporters of Mussolini in the United States were the businessmen, and we all know about Henry Ford.
  • by N3WBI3 (595976) on Friday June 08 2007, @02:06PM (#19442195) Homepage
    Whenever there is a great leap forward in our understanding there are those who would turn to eugenics. In england a doctor performing sex selection abortion is now trying to get permission for a severe squint and has said he believes ever hair color is a fair reason to terminate a pregnancy (on the basis they might be mocked and that could cause them mental distress).

    Information, knowledge good! what we do with it, usually not so good.

    • I'm sure that most level-headed people would agree that actually terminating a pregnancy due to very small unfavorable genetic traits such as those you mentioned is completely wrong. The benefit to this will come when we can use methods of gene-therapy in order to eliminate most life-threatening diseases entirely.
      • Re: (Score:3, Insightful)

        Abortion was probably a bad example for me to pick because it will, inevitably, cause contention over that and not the larger issue. A poster later put up insurance claims and other forms of discrimination there is no measure to the evil man can do with information evil takes little R&D and comes naturally to us. The benefits you talk about take extensive time to develop and implement.
      • Re: (Score:3, Interesting)

        I'm sure that most level-headed people would agree that actually terminating a pregnancy due to very small unfavorable genetic traits such as those you mentioned is completely wrong.

        I would argue that most level-headed people would not be interfering with the private affairs of others, especially when what those others do does not affect them.
      • by Anonymous Coward on Friday June 08 2007, @03:12PM (#19443405)
        I'm sure that most level-headed people would agree that actually terminating a pregnancy due to very small unfavorable genetic traits such as those you mentioned is completely wrong.

        So....why? Doesn't the freedom to choose whether or not to end a pregnancy include the freedom to choose to end it for any reason or no reason at all? If it's wrong to terminate for these reasons, what makes it okay to terminate for other reasons, or no reason at all?

        Posting anonymously because I just want you to think about this. I don't want to deal with a flood of flames.
    • I guess it's no worse than, "because I don't want to have a baby."
    • You have a link to that doctor story?
      • Sorry, that was very lazy of me... Meh its friday

        http://washingtontimes.com/technology/20070518-10 0 822-2536r.htm [washingtontimes.com]

        Here is the link

        " The man to whom the license was granted, professor Gedis Grudzinskas, was asked whether he would screen babies for hair color. He replied that hair color "can be a cause of bullying, which can lead to suicide. With the agreement of the HFEA, I would do it.""

        • Wow, that's messed up. I took one look at the source (Hello Rev. Moon!) and had to look up the original Daily Telegraph [telegraph.co.uk] article. It's not nearly as sensationalistic as the Washington Times piece. Yeah, the Telegraph is a bit conservative too, but Brit conservative is like American left wing. It sounds like this case, where both parents have the same severe genetic condition, is not that bad, but the same doctor does claim that he would screen for hair color, because certain hair colors can be a cause bullyi
        • Like this family [bbc.co.uk]

          Just because a community of people are incapable of handling minor differences in appearance, justifies denying others the right to life?
  • Good news, but... (Score:4, Insightful)

    by ArcherB (796902) * on Friday June 08 2007, @02:10PM (#19442253) Journal
    Can we expect (hope for) laws preventing this information being retrieved or considered when calculating insurance premiums or other times when this may lead to discrimination?

    • If I have speeding tickets, and my auto insurance carrier finds out about it, is that discrimination?

      Is it to our long-term interests to force insurers to operate in ignorance?
      • Is it to our long-term interests to force insurers to operate in ignorance?
        isnt that the point of insurance? if insurance companies knew with 100% accuracy how much they're going to have to shell out for you, then they're going to charge at least that much, and then there's no point in getting insurance.
        • by JesseMcDonald (536341) on Friday June 08 2007, @03:01PM (#19443207) Homepage

          Is it to our long-term interests to force insurers to operate in ignorance?

          isnt that the point of insurance? if insurance companies knew with 100% accuracy how much they're going to have to shell out for you, then they're going to charge at least that much, and then there's no point in getting insurance.

          The purpose of insurance is to mitigate unknown, future risk. Anything that can be used to reduce the present uncertainty in the risk is a perfectly reasonably factor in determining premiums. Insurance is a way of trading future risk for present cost within a given risk-class equivilency group. It works best when the risk classes are finely divided; in other words, when the premiums paid reflect the best known estimate of the individual insuree's risk.

          If you were to force the insurance agency to charge a single premium, ignoring individual risk factors, then those who know they have less risk will find the premiums excessive and choose not to participate. As a result the premiums would have to be increased, and yet more marginal customers would leave. In the end you'd be left with just the highest-risk customer(s) paying a premium appropriate to their level of risk. All "non-discriminatory" insurance really does is make it impossible to get low-risk insurance.

          As for the specific problem of being born with an expensive genetic issue, I think there is a way to leverage insurance here as well: the parents can take out an insurance policy on the child prior to conception, based on their own genetic risk factors.

          • by brunascle (994197) on Friday June 08 2007, @03:22PM (#19443569)

            If you were to force the insurance agency to charge a single premium, ignoring individual risk factors, then those who know they have less risk will find the premiums excessive and choose not to participate.
            that's assuming that someone who believes they will pay more for insurance than will get out of it wont sign up, which is clearly not the case. the average person pays more than they get from it, otherwise the insurance companies would go out of business.

            the average person is paying about average healthcare. you're probably paying close to average. if you believed you were low risk, would you opt-out? i wouldnt.
            • Insurance underwriting can break even and still be rational. Much of the money made by insurance companies is made by investing premium dollars into marketable securities (corporate and gov't bonds, stocks, etc.), from which the company derives investment income. In the break even situation, this is equivalent to borrowing money at a zero % interest rate, investing the proceeds at a higher interest rate, and paying off the loan at the end of its term. If underwriting is profitable, it is like borrowing mone
      • I think there was a law in the works to outlaw discrimination based on genetic information. I remember seeing something about it on ./

        However, the problem with the speeding ticket example is that you made the choice to speed and were then caught on it. People don't get to choose their genes (at least not yet!), and this information is more or less set before birth.

        This may also be another argument that free-market health insurance is flawed, since the profit motive to charge more for the genetically at risk
      • i idea of how health insurance would work is kinda like a group taking care of each other.

        in any group you will have poller opisits and average people.

        you will have people that are never sick that never need help - but they pay the payment
        you will have the people that are average in the bell curve and their payemnt covers their use
        you will have people who are extreamly sick all the time and need all the help they can get - they are paid for by the rest

        it makes sence - i mean for 24 years of my life was one
  • I can just picture insurance companies champing at the bit to work market tests into their eligibility rules and rate structure, and employers trying to find ways to discriminate on the basis of having these markers.

    Longer term (where "long" == years until we find an affordable, widely applicable way to delete these markers from an individual's genetic heritage) this is a really good thing.
    • Are you absolutely certain that permanently eliminating certain variations from our gene pool is such a good idea?

      After all, just to cite one example, the gene responsible for sickle cell anemia also confers significant resistance to malaria to its carrier.
  • Welcomed News (Score:3, Insightful)

    by Normal Dan (1053064) on Friday June 08 2007, @02:11PM (#19442299)
    This is welcomed news for expecting parents. They can now potentially extract DNA from embryos to determine what diseases they are likely to have. With this technology, they could discard the bad ones and keep the good ones, thus producing healthy children. This may even help thrust forward our next step of evolution.

    Imagine a world full of healthy people. The cost of healthcare would reduce greatly, thus allowing us to spend more on education and furthering the advancement of the human race.
  • by TripMaster Monkey (862126) on Friday June 08 2007, @02:11PM (#19442305)
    Sorry to have to inject the obligatory dystopian note into what should be a positive story, but that's just how my mind works.

    Who will have access to this information?
    • Law enforcement?
    • The Government?
    • Insurance companies?
    • Prospective employers?
    • (Etc....you get the point...)


    Some people fear that this information will be used to discriminate against disease-prone individuals in vivo...but it's far more likely that the first discrimination will happen long after birth.
  • by dpbsmith (263124) on Friday June 08 2007, @02:12PM (#19442329) Homepage
    Welcome to the brave new world, where everyone has a pre-existing condition.

    The good news is, you'll have knowledge that could extend your life or even save it, if you could get treatment.

    The bad news is, in countries with profit-based free-market medical insurance, you won't be to afford that get that treatment, because insurance companies will jack up their premiums when they find out about you.

    Everyone has seen this coming for decades. Now it's here. I don't think the United States is ready for it.
    • Re: (Score:3, Insightful)

      If you were waiting for another reason to get rich, here it is!

      What do you mean we aren't ready for it? Today we have no cure for diabetes. If they invent the cure tomorrow, and insurance companies won't pay for it... no one is any worse off. Everyone complains about health care costs rising. Well, you know what? In the 50's when health care was apparently affordable, my Grandfather would have died of the stroke that he had before they gave him the blood thinner that saved his life and the stent in his caro
      • Why is it that people expect premium health care when they can't afford premium food, cars, clothes, or a big-screen TV?

        Nobody needs premium food, cars, clothes, or entertainment. If you can afford it, enjoy it, but you can certainly live your life without it.

        In my opinion, everyone should have access to the best health care possible, however: this is not only in the best interests of the individual, but in the best interests of society, where a healthy population is more productive, happy, and indicative of the success of your country. Why should the rich have better medical benefits granted unto them? Is a CEO of a major corporation who rakes in hundreds of millions of dollars a year more important than a researcher who is paid much, much less but makes important contributions to medicine, and thus entitled to a prompter, higher quality of treatment?

        The US attitude that you should be able to buy better medical care baffles my mind. Then again, I'm a Canadian, so I was raised with an entirely different mentality. Furthermore, I have Crohn's Disease and am currently seriously ill (I have been for a few months as my doctors try to figure out a treatment that functions for me). With constant fevers of 101 F+ and crippling pain, I am for now unable to work: fortunately, I don't have the added stress of medical bills or even the worry that I could be completely denied treatment because of no group insurance coverage. There is no insurance company that would willingly agree to take me on as a client as my medications cost about $400 / month, and some Crohn's patients run up around $100k / year for a disease whose cause is largely unknown and is thus completely out of our control.
        • The problem is there is no limit to the cost of the best health care possible, Now personally I am fine with the idea that the first 10k / year is free but what about the first million?

          Let's take an extreme example. Say you have a 100% brain dead 18 year old. We could spend over 1 million a year to keep them alive for the next 70 years or not. Now if the family want's to spend their money to do so that's one thing but why should society? What about hypochondriacs? I don't mind paying for addiction counse
        • The best health care possible? See, right there's the problem. Say I have a rare disease whose symptoms can mostly be mollified by available drugs, most of the time. Sure, it's reasonable for society to let everyone of about this level get said drugs--healthier people being more productive, or just straight out being humane, whatever. But wouldn't you get better treatment if you had a doctor working full time on examining your illness--or your genome--looking for a cure? Or a team of doctors? Or an en
  • I wonder how big the permutation is for the difference for humans and our close cousins. Such a number would in theory give very combination for every person possible. This could be useful for grouping and identifying certain sequences when we find matches with a group of people who have a common disease. Once we find common sequences we can start work on gene therapy.
  • While it's great to hear that people are having leaps and bounds towards treating some of these diseases, I would like to point out that with the amount of information we know about hypertension, diabetes, and heart disease, it should be possible to almost completely wipe out premature development of these diseases in the non-elderly and healthy.

    I understand that's not always the case and that in some cases hypertension, diabetes, and heart disease cannot be prevented, but I think for the majority, humani
  • by dorpus (636554) on Friday June 08 2007, @02:31PM (#19442713)
    Speaking as a statistical genetics insider, I can tell you that the replication of results in this field is very poor. A team of scientists somewhere will announce they found a gene for XYZ, which is reported in scientific journals and mainstream media -- however, the findings fail to be replicated by other scientists, and the negative results are usually not published. Over the years, hundreds of scientists have claimed to find genes responsible for diabetes, hypertension, autism, etc.

    Since there are tens of thousands of genes in the genome, a study with 17,000 subjects makes for less than one subject per gene. (Exactly how many "genes" are in the genome anyway? What exactly defines a "gene"? That is another vast topic.)

    Statistically speaking, there should be at least ten subjects per covariate (gene) tested. There is a great deal of hoo-haa over microarrays, but the more you learn about microarrays, the more you will learn just how unreliable they are. The same "disease" can have vastly different pathophysiologies and genetic origins across population groups. Epigenetics, penetrance, expressivity, intron effects -- all multiply the complexity exponentially.

    In short, genetics is to biology what nuclear fusion is to physics -- a promising technology that will remain a "few years away" for decades to come.

    • Re: (Score:3, Informative)

      You don't sound much like a statistical genetics insider to me.

      Statistically speaking, you don't need 10 subjects per covariate. Where did you pull that number from? Let's say we have 100 subjects (50 cases, 50 controls), and 100 tests that we're performing. Let's say one of those tests segregates perfectly with our subjects. Bam! Huge result statistically. The probability of that result is astonishingly small (p ~ 10^-30). That means unless we are performing close to 10^30 tests, we can believe th
    • Re: (Score:3, Informative)

      What many people fail to realize is that genetic testing is already being done, routinely, all over the world. (Yes, also in the US)

      Typically termed Genetic Newborn Screening, a newborn is tested against a number of diseases before being discharged from the hospital.
      See the following for some information:
      http://learn.genetics.utah.edu/teachers/units/newb orn/NGS-student%20packet.pdf [utah.edu]

      So your comment that genetics is just a promising technology for years to come is, at least somewhat wrong. It's here already,
  • Hmm interesting. I'm type 2. I need to find more info on this research. I always thought it wasn't about my diet or excercise.
    Heck I ride a bike down the Bristol bike path, play soccer and softball too. I always thought there has to be a genetic defect
    that caused my insulin resistnace. Now.. I hope to find what the genetic code that is defective does. This way maybe I can treat
    the source of the problem rather than taking a DDP-4 inhibitor (I looked it up, the drug inhibits an enzyme that's not only im
  • I've long wondered what the effects of modern medicine have on natural selection. People who would normally die of natural genetic defects are living and breeding, which is causing the gene pool to retain these genetic defects.

    If the results from this article are correct, then people who have these genetic defects may be able to "turn off" the genes. (Maybe I'm reading that into the article). If this is the case, then my above worries are groundless, and my faith in modern medicine has gained some ground.
  • by VE3OGG (1034632) <VE3OGG@nOSpam.rac.ca> on Friday June 08 2007, @03:57PM (#19444093)
    Now this is something I have thought about long and hard (though no hard research to back it up) about. WHat happens when we do get the power to *poof* the bad genes out of existance from an unborn infant? Well, obviously they won't develop "problem A", but what about other factors? For instance, I know that black people in regions of Africa are born with sickle-cell anemia, but this also helps prevent a certain disease commonly transported by insects in the region. How do we know what (if any) other things might depend on that particular gene?

    And on that note, someone mentioned that this may well lead us to our next step in evolution -- that may well be true, but shouldn't evolution happen in response to natural factors by nature's invisible hand? Not some doc in a lab? I mean, so many people on Slashdot are keen on letting the "ivisible hand of capitalism" work the market, why shouldn't we let nature decide what is best for us?

    I believe this sort of thing was covered with the Asgaard in Stargate SG-1, they died out because they genetically modified their bodies past a certain point where they could no longer reproduce, only extend their own lives. Now, I am not saying there is any scientific basis for something liek that happening, but aren't parables supposed to make you at least think before acting?
  • by gbobeck (926553) on Friday June 08 2007, @04:00PM (#19444147) Homepage Journal

    One of the most exciting finds was a previously unknown gene common to type 1 diabetes and Crohn's disease, a type of inflammatory bowel disorder, suggesting that they share similar biological pathways.'


    As a type 1 diabetic, I've always said that diabetes is a pain in the ass. Now, since this research shows that it shares a common gene with Crohn's disease, I guess that my statement is even more true than ever.
  • by MikShapi (681808) on Friday June 08 2007, @07:11PM (#19446213) Journal
    I'm reading all the morals police comments here, and I'm quite surprised.

    Will someone PLEASE explain to me how the ability to diagnose diseases better and earlier is a BAD thing?

    There are numerous eggs and numerous sperm to make numerous children by any couple.
    When one of each gets a chance at life, a lot of others don't. One lives, others die. If we leverage genetics and choose zygote X where naturally Y would have gotten, it's a zero-sum morals game. A different one lives. As they're not yet anywhere near development, putting morals on this is akin to calling masturbation genocide. LOTS of potential human beings never get to live. It's the natural order of things. Forcing morals onto this and blaming people for it is nothing short of lunacy.

    The other side of the coin is, of course, that a LOT of life-ruining conditions (not only for the affected individual, but quite often for his entire family) are simply side-stepped.

    Discarding 41st-week pregnancies due to a disliked color of hair is easily avoidable using legal regulation where otherwise sane laws don't exist (say, laws allowing the mother the first part of her pregnancy to decide whether she is ready to commit and allowing her to abort, yet disallowing non-medically-motivated abortion once a certain reasonable point in the pregnancy is crossed, much like you can't just kill your 3-year-old because you don't want to commit to growing him).

    Yet how do these mild, pathetic and trivial-to-overcome "dangers" reason to bash the enabling technology that would save so much grief?
    • Take off your blinders for once.

      If you disagree with the arguments posed, by all means dispute them. But don't just dismiss them out of hand, with a snarky "tinfoil hat" comment.
      • I think that GP has a point. With most of the we-found-a-way-to-aquire-new-information-isn't-th i s-neat type of articles, the reaction on slashdot is usually favorable. But when it comes to genetic data, it does seem that paranoia arises.

        Asking GP to answer all the posts begs the issue. GP is talking about a trend. It is one thing to tell someone on five different occasions that he really has had too much to drink. It is a completely different thing to confront him and tell him that he is an alcoholic
      • But he has a point. Is public dissemination of information good or not? Slashdot is very schizophrenic when it comes to issues like this. I wouldn't expect a nerd site to be full of so many Luddites. Honestly, what are we going to do, stop progress in medicine because insurance companies might use the data?